RNA id: TU57357


Basic Information

Item Value
RNA id TU57357
length 668
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G42583
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 14728460 ~ 14733285 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTTGGAGACAAAAATGAAGCGTAAATCATTTTGCatgaactgttttatttattttcttgttcaGTTGCCTGAAGTGACAGTTGTGGATCGTTTCATGATCTTTAATGGCGTCAGCCTGGGTTTACTcagtggtggaggaggaggacacCACCTTCCCATCAACCACCTCCTCCACAATGGTCTTCACCTTCACAGTACGAGTGGGGCCAGTACTGGTACTGCTGGCATTGCTGACACTGCTCACGCTGCTGACACTGCTCAAACTGACTCCTCCACCACTGTGAAATACACAACAATATAAAAAGGGTGTGgtaatttaaacatttctataGTTCTAGAACAATCTATGTACCGATCTATAGTACAGAACAATCTGAAGAAATGCCCCTTACCCGCCGCCAATTTCTCCATCAAGCAGCCTCCGGTACTCAGCAATCTCCATCTCAAGGCGGGTCTTGATGTCCAGCAGCATTCGGTACTCAGCAATCTCCATCTCGAGGCGGGTCTTGATGTCCAGCAGCATTCTGTATTCCTGGTCTTTCCGCTCTATTTCAGCTTTGATGTCCTGCAGCTGCCGTTCTATCCCTGTGATGTTGACCTGCATCGTACCTAGTTTCACTGAGTAGCGTAATTCTGTTTCTGATAGAGTACCCTCCAGAGCATCTCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57326 lncRNA upstream 39707 14685299 ~ 14688753 (+) True G42571
TU57314 lncRNA upstream 59177 14627857 ~ 14669283 (+) True G42564
TU57289 lncRNA upstream 168144 14538385 ~ 14560316 (+) False LOC111192557
TU57291 lncRNA upstream 168144 14550796 ~ 14560316 (+) True LOC111192557
TU57287 lncRNA upstream 182239 14538385 ~ 14546221 (+) False LOC111192557
TU57342 lncRNA downstream 7989 14741274 ~ 14749183 (+) True G42579
TU57365 lncRNA downstream 32421 14765706 ~ 14768714 (+) True G42590
TU57374 lncRNA downstream 137071 14870356 ~ 14876200 (+) False G42599
TU57379 lncRNA downstream 137071 14870356 ~ 14874073 (+) False G42599
TU57380 lncRNA downstream 137071 14870356 ~ 14877360 (+) True G42599
XM_022669679.1 mRNA upstream 2503 14711375 ~ 14725957 (+) True LOC103026778
XM_015603319.2 mRNA upstream 3822 14711374 ~ 14724638 (+) False LOC103026778
XM_022669680.1 mRNA upstream 3857 14711374 ~ 14724603 (+) False LOC103026778
XM_007240250.3 mRNA upstream 68435 14622178 ~ 14660025 (+) True LOC103026177
XM_007240131.3 mRNA upstream 194290 14483941 ~ 14534170 (+) True LOC103044493
XM_007240135.3 mRNA downstream 100939 14834224 ~ 14868739 (+) True LOC103045821
XM_007240145.3 mRNA downstream 238976 14972261 ~ 14994616 (+) True LOC103022023
XM_007240152.3 mRNA downstream 311989 15045274 ~ 15051775 (+) True LOC103023991
XM_022669684.1 mRNA downstream 312322 15045607 ~ 15051775 (+) False LOC103023991
XM_022669683.1 mRNA downstream 312453 15045738 ~ 15051775 (+) False LOC103023991
XR_002649939.1 other upstream 1106418 13617083 ~ 13622042 (+) False LOC103034435
TU56827 other upstream 1277983 13448592 ~ 13450477 (+) True G42208
TU56657 other upstream 2013432 12705559 ~ 12715028 (+) True G42096
TU56588 other upstream 2095031 12632816 ~ 12633429 (+) True G42068
TU56432 other upstream 2387547 12336542 ~ 12340913 (+) False LOC103047294
TU57395 other downstream 161777 14895062 ~ 14899248 (+) True G42605
TU57948 other downstream 1245284 15978569 ~ 15983525 (+) False LOC103036127
XR_002649941.1 other downstream 1246145 15979430 ~ 15984632 (+) True LOC103036127
TU58501 other downstream 2460253 17193538 ~ 17196116 (+) True G43360
TU58763 other downstream 3278888 18012173 ~ 18014499 (+) True G43537

Expression Profile