RNA id: TU57379


Basic Information

Item Value
RNA id TU57379
length 1452
lncRNA type inter_gene
GC content 0.48
exon number 9
gene id G42599
representative False

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 14870356 ~ 14877360 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGGAGGTCACCCAGTTTTATTTACATcgaatgttaaaataaaatgcaaaacaatTGTTGAAACTGTTACACAAAAATGACGTGACTTCAttaaaacatactgtacatttaatataaaacactaaatgtacaattaaaagaaaaaaataaaggaaaaacacCTTTCATAAGGTTATGGGCTGTAGAAACAATTCATTAAaagaaaatttacaaaaataaatatctgaaaTGAGGTCATCACATGGTGAGGGAAATCAGAGCTTTAAAACTTTAAGGAAGGCCTGCAGCCAAGATGCTGCCCAGCAGTGCACGATCCTTCAGAGCATTCTCCACATCCTTTTCTTCAATCTTCAGACAgatctTTGTGAGTCGTGCTTCCTTGGCCTTCTTCAGAGAAAAGATACCCCTGCTCTCCAGCAGGCTGCACAGAGACAGGCATTCACCTTGTcccactgcactgacctgcctCTGCTTACACAGTTTACTGTAGGCCTCACACAGCTTGCCTAACTGGACCTCTCTACTCTTGCCGTTGCGTGTGAGCAGCAGCAGGCAACAGACCAGGAGCTTCTGCTGTAGAGGGAAGCTTTCTCCATCTCCTCCTGCACTACTTGTCATCCTGTCTCCATACACCTCAGACAGGACCTTAGCCACCTGAGGAACACTCACGCGTGATGCTTTAGCATTTGCTGCGGGTTCTGATGCCTCTTTGGATTTGTTTTTGGACTCAACCATCTCAACGGCTCTCctgcAGATGTCCAGTGCTTTGCGAGCATCTCCTGACACGGCTGACACCTTCCTGGCACAAAACTGGATAGCAGCACCATCCAAAACACCCTCTCCTGATAcCTGTGCAAGCCTGTCTTGGACGATGGCAGTTAGCTCTTGGCGGCTGTATGGTGGGAAATGGAGGAGCTGTGGTCTGCAGTGAGGCTTTGTCTGCAACCTGGGCAGAATACGGTCTGTAAGATCCAGCGCATTGGCAATACCTATGAGGCACAGGCGGGACTTTGAAAGATAAGGCCATTCAAAGATGGTGTAGAGAACATCCTGGGACTTGCTGTCCAGCTGATCCATTTCATCCAGAACCAACAGCACAGTGGGCCCTGAACTGGTCAacagtttctccagtttaccACCACTGGAGCTTTTAGAGGTCTTCAACTTCTCAGCCAACAGAGGAAAGATCGAATGGGAGCTACGCAAGGTCATACAGTTAATTACCACAGTCTGCACTCCCTTCAGCAGAGCCTTCTGTTCCTGAAGCACACAGTTAAGGCAGGCTGTCTTCCCCGTCCCTGGTGCTCCAGAGATGTACAGGCTGGAGGGCTTGCCAGGCACCACATGGTTCTCCAGGAACGAAACAATGGTAGCTCGCTCTGCTTCACGAGAGAGCAGTCGTTCAGGCACAGCTGTGTGCAGAGACTGCTTCACACTCTGGTAGTGTGACTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57365 lncRNA upstream 101642 14765706 ~ 14768714 (+) True G42590
TU57342 lncRNA upstream 121173 14741274 ~ 14749183 (+) True G42579
TU57357 lncRNA upstream 137071 14728460 ~ 14733285 (+) True G42583
TU57352 lncRNA upstream 137405 14728460 ~ 14732951 (+) False G42583
TU57326 lncRNA upstream 181603 14685299 ~ 14688753 (+) True G42571
TU57381 lncRNA downstream 4946 14879019 ~ 14881077 (+) True G42600
TU57389 lncRNA downstream 16868 14890941 ~ 14903934 (+) True G42604
TU57428 lncRNA downstream 92077 14966150 ~ 14966870 (+) True G42626
TU57438 lncRNA downstream 126362 15000435 ~ 15002096 (+) True G42632
TU57441 lncRNA downstream 136407 15010480 ~ 15010974 (+) True G42633
XM_007240135.3 mRNA upstream 1617 14834224 ~ 14868739 (+) True LOC103045821
XM_022669679.1 mRNA upstream 144399 14711375 ~ 14725957 (+) True LOC103026778
XM_015603319.2 mRNA upstream 145718 14711374 ~ 14724638 (+) False LOC103026778
XM_022669680.1 mRNA upstream 145753 14711374 ~ 14724603 (+) False LOC103026778
XM_007240250.3 mRNA upstream 210331 14622178 ~ 14660025 (+) True LOC103026177
XM_007240145.3 mRNA downstream 98188 14972261 ~ 14994616 (+) True LOC103022023
XM_007240152.3 mRNA downstream 171201 15045274 ~ 15051775 (+) True LOC103023991
XM_022669684.1 mRNA downstream 171534 15045607 ~ 15051775 (+) False LOC103023991
XM_022669683.1 mRNA downstream 171665 15045738 ~ 15051775 (+) False LOC103023991
XM_007240158.3 mRNA downstream 188554 15062627 ~ 15089931 (+) True rtel1
XR_002649939.1 other upstream 1248314 13617083 ~ 13622042 (+) False LOC103034435
TU56827 other upstream 1419879 13448592 ~ 13450477 (+) True G42208
TU56657 other upstream 2155328 12705559 ~ 12715028 (+) True G42096
TU56588 other upstream 2236927 12632816 ~ 12633429 (+) True G42068
TU56432 other upstream 2529443 12336542 ~ 12340913 (+) False LOC103047294
TU57395 other downstream 20989 14895062 ~ 14899248 (+) True G42605
TU57948 other downstream 1104496 15978569 ~ 15983525 (+) False LOC103036127
XR_002649941.1 other downstream 1105357 15979430 ~ 15984632 (+) True LOC103036127
TU58501 other downstream 2319465 17193538 ~ 17196116 (+) True G43360
TU58763 other downstream 3138100 18012173 ~ 18014499 (+) True G43537

Expression Profile