RNA id: TU57381


Basic Information

Item Value
RNA id TU57381
length 2033
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G42600
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 14879019 ~ 14881077 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCATaacctttattttcaaattCAACACAATAGCCAGTCTACTGTTACAAACTGCTCATTTTGGCAGCTTAGAACTGTTTACCAAAGTCACATAAAATTGCAACAGGCCAAGAAGGAGACAAAAGAGGTTCTTGCAACAGTCCAAGAAGAAAACCCACCTCTGGCCACTTAGAGGCTACATACGGATAAACGCTCTCCGGAAAAAGACCAGATAGGAAATGGTCTCCTCATAATAAACGTTTTACTGTTATAGAGGTTTAATTCTCTGTATTACAAAACTTtacaataaaaatctttaactacattttatatagtgtaatatacattattacaattcattttcttaattattacactagtgttttatttaacaaaaagaaaaggaaaaaaagaaagaaaaaaaaacattggtacCAGTTAAATCTGTGAATGACATCTTTCTTCCAGAGaaattcataaggttttaattaataataaaggaATATGATGCTGATTTTACAGCACATGTTGCACCATGAGCAGACCCTCAAAAATGTCAGGGCCTACTGCATACACTGTGTGCTGAGTGGCACTTAGGATATTTGGTCAGTACTAAAGAAGAGTGGTTAGGAATCAGGTAAGTTTAACACATACAAATCAAGGTATCAGATTTCCCTTCTTTACAGACAAAATTCAAATGCATTGCAACGTATTTGCCGCTCACAGCAGGAAAGGCAAAGGAATGGCTGCTCCACGTTCCTGTACTAAACAACACTCAGATTGTTCAGAGATGAAATCCAAATGGAATGAACGATTCTATCAAAAGACACAGggctaaaaataaacaataacattTACTATATAGCCCCTACTATTGGcaaaataatcacaaaaaataaaatcacacaatCTTCCCTAATATACTTGACACATTAGCTCTCATTTGGGAGGAACAGTCTATGATACAGTAACAAAGAATTACTTTATGATTCTAAGGcgcaaaaacatgaaacaaaacaaacaaaaaaaaaactttccgcATAATGTAATGATTGtctacttaattaattaattaattattttttcttttcactctGATAGAGATAGATTGGCATAAAACAAGTGCTTGGTCCATTAGTTGATGCCCATCTCTGGCAAAGATTGTGCAGCTGTCACATTAGAAGGAATGCATATATAGAGAATAGTTCTCTTGGGTCATCTAGAGGCACAATACAATATAGGCTTCACGCTTTATCAAACTGCATAGTGTTTTATGGTCTGGAGGTATTTGTTAGGAACCAGTCGGAGCAGAAACAGGGTTGATTTCTCAGACGTGATTCAGCAATGAGAATTCACCAAATTTGTTTCATCAGTGAAAAATAATCTTGCTTAGTGTATTGTGGTCTTAGCTTATTCTGGAAAAGCAACCCATGTTGTGGTCACGGGATCATAAGTAATCTAGTTTCCCTATTTGGTCTATTTGGTCAGATATAAATGTTGGGCACCCctggcatttttttaaatgcatagttaatattaaattacattactatTGCCATTATATaagtttattttgttatttgtattatattattattatttattactataaCAAATATGATGTGTAAGACCTATTAATTTTCTTCATctgattataaattaattattcagaTCAAGACAGATATTTTTGTTGAGGTAAACTGCAGTGTGCATTCTCTCAAAACAATGTGCTATATAAGAACACACTTCtgttttatgtctattttaccACATATTGTGTAGGGCACACGCTTAGTGTGAACTGTGTTATTTGAACACATCTGAATGCACAGCTAGTGTTAAATCGTTAAGTCTTTATCTGGATACACAGGTGTGTTCAAACAGTAGCATGCCatgtgttgtttttaacacatttattttgagAGTGTACAGGTAGGTGTATTAGTGTGCTGATGTGAATGTGTGGAGTTGGGTTCAAATTTCATAGTCGTTCCTCACTTCCTGAGTGTATTTCACCTTGCAACAGGTGGCAGTGGAGGAGCTCCTCTCATCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57380 lncRNA upstream 1659 14870356 ~ 14877360 (+) True G42599
TU57374 lncRNA upstream 2819 14870356 ~ 14876200 (+) False G42599
TU57379 lncRNA upstream 4946 14870356 ~ 14874073 (+) False G42599
TU57365 lncRNA upstream 110305 14765706 ~ 14768714 (+) True G42590
TU57342 lncRNA upstream 129836 14741274 ~ 14749183 (+) True G42579
TU57389 lncRNA downstream 9864 14890941 ~ 14903934 (+) True G42604
TU57428 lncRNA downstream 85073 14966150 ~ 14966870 (+) True G42626
TU57438 lncRNA downstream 119358 15000435 ~ 15002096 (+) True G42632
TU57441 lncRNA downstream 129403 15010480 ~ 15010974 (+) True G42633
TU57449 lncRNA downstream 133866 15014943 ~ 15019535 (+) True G42636
XM_007240135.3 mRNA upstream 10280 14834224 ~ 14868739 (+) True LOC103045821
XM_022669679.1 mRNA upstream 153062 14711375 ~ 14725957 (+) True LOC103026778
XM_015603319.2 mRNA upstream 154381 14711374 ~ 14724638 (+) False LOC103026778
XM_022669680.1 mRNA upstream 154416 14711374 ~ 14724603 (+) False LOC103026778
XM_007240250.3 mRNA upstream 218994 14622178 ~ 14660025 (+) True LOC103026177
XM_007240145.3 mRNA downstream 91184 14972261 ~ 14994616 (+) True LOC103022023
XM_007240152.3 mRNA downstream 164197 15045274 ~ 15051775 (+) True LOC103023991
XM_022669684.1 mRNA downstream 164530 15045607 ~ 15051775 (+) False LOC103023991
XM_022669683.1 mRNA downstream 164661 15045738 ~ 15051775 (+) False LOC103023991
XM_007240158.3 mRNA downstream 181550 15062627 ~ 15089931 (+) True rtel1
XR_002649939.1 other upstream 1256977 13617083 ~ 13622042 (+) False LOC103034435
TU56827 other upstream 1428542 13448592 ~ 13450477 (+) True G42208
TU56657 other upstream 2163991 12705559 ~ 12715028 (+) True G42096
TU56588 other upstream 2245590 12632816 ~ 12633429 (+) True G42068
TU56432 other upstream 2538106 12336542 ~ 12340913 (+) False LOC103047294
TU57395 other downstream 13985 14895062 ~ 14899248 (+) True G42605
TU57948 other downstream 1097492 15978569 ~ 15983525 (+) False LOC103036127
XR_002649941.1 other downstream 1098353 15979430 ~ 15984632 (+) True LOC103036127
TU58501 other downstream 2312461 17193538 ~ 17196116 (+) True G43360
TU58763 other downstream 3131096 18012173 ~ 18014499 (+) True G43537

Expression Profile