RNA id: TU57428


Basic Information

Item Value
RNA id TU57428
length 721
lncRNA type inter_gene
GC content 0.65
exon number 1
gene id G42626
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 14966150 ~ 14966870 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCGTCGCCTGGACGTCAGGTGCCTCGGGGCCGCCGTGCCGCGGCGCTTTGTTGTTcgccgctgccgccgccgccgtGGGCGCCCCCCGCGCGCGCTCCACTTTGCTCTTCACGCCGCCGTGAGCCAAGAGCGTCCCGCCGCCCGACGACACGGTGCCGCTCTCGTCGTCCAGGCGGCGGTCGTCCTCGGCCGCGGAGACCAGGCGCATCAAGACGAAATCGGGAGACATATCTCGCGCGTCGTTCATTCTTCGTCCTCGGTGCACCGAACgggagcgagcgagcgagatcAATGCGTTTCACATCGCCCCTCAGTCTCCAGGCATCAGGCTCGGCTAGTGCACCATAATGGAAGCCGTAATAATCCGCTCGCTCGTGGTGTTTTAACCTGCACTGCCCTCCTCCGCCACGACGAATCACAGCACGAGCCGCTCCGGCCGCTCGCTCAGCATCGCACGACCGTCACGGCGGCGCCGGATCTTCCCGCACAACAACGGCATTTACAGGCCGAGCtcgaacaaaaaaacacagcagcggGTCCTCGCAGGGTCATCTGTAACGCTTCAGTGAACGGGCTGCTGCCTGCGCGTCTCCGCTCACATTACCGTCTCTACGGCGCACACACAGGCCCCACCCGCGCCATACGCTGTTTTTTTACCCACCCGTATTCAGACAAGCCCCGAACCCCCCGGCACCGCGATTGGCTCCCTGGCGAGTGTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57389 lncRNA upstream 62216 14890941 ~ 14903934 (+) True G42604
TU57381 lncRNA upstream 85073 14879019 ~ 14881077 (+) True G42600
TU57380 lncRNA upstream 88790 14870356 ~ 14877360 (+) True G42599
TU57374 lncRNA upstream 89950 14870356 ~ 14876200 (+) False G42599
TU57379 lncRNA upstream 92077 14870356 ~ 14874073 (+) False G42599
TU57438 lncRNA downstream 33565 15000435 ~ 15002096 (+) True G42632
TU57441 lncRNA downstream 43610 15010480 ~ 15010974 (+) True G42633
TU57449 lncRNA downstream 48073 15014943 ~ 15019535 (+) True G42636
TU57451 lncRNA downstream 50930 15017800 ~ 15054880 (+) True G42637
TU57464 lncRNA downstream 90345 15057215 ~ 15057675 (+) True G42647
XM_007240135.3 mRNA upstream 97411 14834224 ~ 14868739 (+) True LOC103045821
XM_022669679.1 mRNA upstream 240193 14711375 ~ 14725957 (+) True LOC103026778
XM_015603319.2 mRNA upstream 241512 14711374 ~ 14724638 (+) False LOC103026778
XM_022669680.1 mRNA upstream 241547 14711374 ~ 14724603 (+) False LOC103026778
XM_007240250.3 mRNA upstream 306125 14622178 ~ 14660025 (+) True LOC103026177
XM_007240145.3 mRNA downstream 5391 14972261 ~ 14994616 (+) True LOC103022023
XM_007240152.3 mRNA downstream 78404 15045274 ~ 15051775 (+) True LOC103023991
XM_022669684.1 mRNA downstream 78737 15045607 ~ 15051775 (+) False LOC103023991
XM_022669683.1 mRNA downstream 78868 15045738 ~ 15051775 (+) False LOC103023991
XM_007240158.3 mRNA downstream 95757 15062627 ~ 15089931 (+) True rtel1
TU57395 other upstream 66902 14895062 ~ 14899248 (+) True G42605
XR_002649939.1 other upstream 1344108 13617083 ~ 13622042 (+) False LOC103034435
TU56827 other upstream 1515673 13448592 ~ 13450477 (+) True G42208
TU56657 other upstream 2251122 12705559 ~ 12715028 (+) True G42096
TU56588 other upstream 2332721 12632816 ~ 12633429 (+) True G42068
TU57948 other downstream 1011699 15978569 ~ 15983525 (+) False LOC103036127
XR_002649941.1 other downstream 1012560 15979430 ~ 15984632 (+) True LOC103036127
TU58501 other downstream 2226668 17193538 ~ 17196116 (+) True G43360
TU58763 other downstream 3045303 18012173 ~ 18014499 (+) True G43537
TU58814 other downstream 3220169 18187039 ~ 18240232 (+) True G43568

Expression Profile