RNA id: TU57438


Basic Information

Item Value
RNA id TU57438
length 264
lncRNA type inter_gene
GC content 0.55
exon number 2
gene id G42632
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 15000435 ~ 15002096 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGTGCATGAAATGTTGATGGGTCTCTCGATGTACTGCTGCCTGGCGACCACACCTGCAGCCCGAACCGCTGCCTCCTGCTCCTCGAGGCTCCTACTCTTAATGCTAACTGAGGGCGGGATGAAGTAGCGCTTCTTTGTCCGTACAGGAATCACCACAGGCTGGGCTAACTGCACTTCCAGTAAGGAAGCAACACACTTTAAACCGGGACCTGCTGGCTGATTAAAGATCCGTAACGTCCTACACATGGACGCCGCCATGATCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57428 lncRNA upstream 33565 14966150 ~ 14966870 (+) True G42626
TU57389 lncRNA upstream 96501 14890941 ~ 14903934 (+) True G42604
TU57381 lncRNA upstream 119358 14879019 ~ 14881077 (+) True G42600
TU57380 lncRNA upstream 123075 14870356 ~ 14877360 (+) True G42599
TU57374 lncRNA upstream 124235 14870356 ~ 14876200 (+) False G42599
TU57441 lncRNA downstream 8384 15010480 ~ 15010974 (+) True G42633
TU57449 lncRNA downstream 12847 15014943 ~ 15019535 (+) True G42636
TU57451 lncRNA downstream 15704 15017800 ~ 15054880 (+) True G42637
TU57464 lncRNA downstream 55119 15057215 ~ 15057675 (+) True G42647
TU57466 lncRNA downstream 56522 15058618 ~ 15061447 (+) True G42648
XM_007240145.3 mRNA upstream 5819 14972261 ~ 14994616 (+) True LOC103022023
XM_007240135.3 mRNA upstream 131696 14834224 ~ 14868739 (+) True LOC103045821
XM_022669679.1 mRNA upstream 274478 14711375 ~ 14725957 (+) True LOC103026778
XM_015603319.2 mRNA upstream 275797 14711374 ~ 14724638 (+) False LOC103026778
XM_022669680.1 mRNA upstream 275832 14711374 ~ 14724603 (+) False LOC103026778
XM_007240152.3 mRNA downstream 43178 15045274 ~ 15051775 (+) True LOC103023991
XM_022669684.1 mRNA downstream 43511 15045607 ~ 15051775 (+) False LOC103023991
XM_022669683.1 mRNA downstream 43642 15045738 ~ 15051775 (+) False LOC103023991
XM_007240158.3 mRNA downstream 60531 15062627 ~ 15089931 (+) True rtel1
XM_007240157.3 mRNA downstream 89275 15091371 ~ 15097213 (+) True zgpat
TU57395 other upstream 101187 14895062 ~ 14899248 (+) True G42605
XR_002649939.1 other upstream 1378393 13617083 ~ 13622042 (+) False LOC103034435
TU56827 other upstream 1549958 13448592 ~ 13450477 (+) True G42208
TU56657 other upstream 2285407 12705559 ~ 12715028 (+) True G42096
TU56588 other upstream 2367006 12632816 ~ 12633429 (+) True G42068
TU57948 other downstream 976473 15978569 ~ 15983525 (+) False LOC103036127
XR_002649941.1 other downstream 977334 15979430 ~ 15984632 (+) True LOC103036127
TU58501 other downstream 2191442 17193538 ~ 17196116 (+) True G43360
TU58763 other downstream 3010077 18012173 ~ 18014499 (+) True G43537
TU58814 other downstream 3184943 18187039 ~ 18240232 (+) True G43568

Expression Profile