RNA id: XR_002649941.1


Basic Information

Item Value
RNA id XR_002649941.1
length 3273
RNA type misc_RNA
GC content 0.35
exon number 3
gene id LOC103036127
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 15978486 ~ 15984632 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gaCGGGCACAATAATAATGGTGCAGTTGGTGATTTACGTTTACGTTGATTGATTTATATCAATTTTTACATGATCTTACCTAGAATTACATATTTACTAGTAGAAACTCCAGTTCCAGtttaaagaaaacaacaacCCAGAGGAAGAAATATGGGCTTTTGTCGAACTATGATGACACAGTGGAGATGGCACAGCTGGAGAGTGATGAGGAGGACACGACTGTTTACGAAGCCAAATCACTTAGGAGatGAGCCTGAAGTGCTGGGTatgaggtggaggaggaggaaagtAATGAAGACAATCTGTTCCtttgaaagagaagaaaagagaagaaatccTGGATAATGCAATGCTGGAGGTGTACAGCTATAAGCAATAAAATGGAATGTGTTCTTGTGATGGAATTGAATGACCAAAAAAGGCCATCTCTGAACTTTAGAGAAGGTCCAGATTTATGCATTGGAAAGCTTGGTGTTGCGTAAGGGACTAAAACTGTTTTGGTAAAGTTCTTGTACTAAAACtgtcttatttcttatttttttgagctCTTATACTGTGTACTAATCAGTCGTACTTCTGAATGACCACCCTTTAATTCTGGAAATATGatgctgtatttgtttttgatTCCACATGTACTGTCAGTGCTTTAGCTGAATTGGACCTTTGTCtcacttctttttttgtttggtagTTTAGGAATGTATTGCATACTGTTATCTTTGTTTACTGGACACACGTATGCAGGTGTTGCAGAGTAATTGGGAGACACAAGTCCAAAACGTTCCACTGTGAGAACATTCCTGTTGAGCGCTGCGTCATAAAATCAATATGAATGTACTTGGAAATGTAAAATGGCTTCACTCCATATTTTGCACTTTGAGAATGCTGATGAGTTGTATagttaaattattttgggtTACTTTATTTAGACAGAGAACAGTTAAGTAAGCGTTCAAACGTGTGAATCAGAAGACAAACTTAGGCTCCGTCCACATGTGTCCTACTATGTTGTTAAAAATAAGGTATTTTGTTTAAGACACTCCTTTTGAAAACGGATTTTAGTTTTGCGTAAACAGGCAAAGTGGAGCTTTTTTGTATAGTACACTATTTATATCACAAAACTACAACATCTACACACAGAAAGTTCAAATTTCAACatgaataaatgtataatatactgttctattacaaatatataagtatCTGTTTAGATTTAGATCTGTTTTTTGTGCCATGCATAGTGCACTACTTATGGAGTAGTGGGTAATTTGGGATTAAATCTCTGTTTTATTCCTTCTTCATGGTGTTTTGAGGTACTCACTGGCCTGGCATGCTCTTGCAAGCATTGTCACCTCTGTGTtgacagaaatatttataaaaacagagagtgagaaatgtctgtttttaaaatatatccaGATACGTGTGGGCAGAGCCTCAGACCTAATCATTTATTGTGCTAAATCCAGAgatctgcatttttttctgtgctgtCTCACACTCTTGAAATGTTTCTTTGAGCGATGTCACAGAAATAAAATTTTTGATTCCATAGAGAACCGTGTTTGTAAAAGAGGTAAATGAGTGTGAAGAACCATTAAATGTAAAGTTTCTTTAACAAATTTGAAGGTTCTTCACACTTTCACAGTCtgtaatacaaacaaaaaaaactaaaatatcttTATGAAACCAAAAATAGTTTTCATGTGGAATGTACAAGCAGATTTCATTTGTAAACCGTCGCTGCCAAAGCTGCACTCTCTGATGATCAGTGTGTTGAATAGCTGTGATTCCTGCATAAGGAAAGTTGTGCTGTCCTGCTATTTTTCTGTAATTATTTTCGTGAAAACATGCATTCCCGAGTTTGATATTCCTGTTATTTCATAAAGGCTGAAGTGAggagattgactgaccttcagtgacttgtaaaaaaaaaaaaaaagtgtgagacCAGCTGGTTATTGACCACAGTGTTTGATATAGTGCCGTTTGGGTGGAATGCATGATATATCTGCAGGTATTTAGTACTCAAAATTCAGATGTCTTAAAGTGTGCCTTtaagtatttttgttttgtttttaaatccaAATGATTGTGATCTGAAATGATTTGTGATAATGCTACTCTTtccatttttaaagctttacttttcttttaaaaataaaatgaaaaatattttgtatttaatatatttctacATCATCCTTTTTAAGGAATGTCTTGTTAAAGGCTGGCTGGAAGTTCGTAaatggttatttttttgttaagtagaTCTTCGTCTCTGCGTTTCATTCCAAAatctattttttctgtttttctttcattccAAATGCATTCATCAGCCAATAGATATTTGGATTTTGATATTTGTTTATATGGTTGTATACTGGAGCTTCAAAACTAGCGGAAGTCCATGTCGCTGAAAATTGTTTCAGTTGACTTAAACCCTGTTTACACTCGAACATTTTTGTTACTAATATCTGGATTGTATTCTGATTAGATTTTATCCACATGCATGTACACAAATGTGTGTCCACTTATTTAAGAATGAAATCAGGCTGGAGTCTTAGACCACCtcctaaagtgttttttatatgatctgatttaaatgtgtcttgggTGAGTTTACACCTGATTTTTATGTGGCTTCCTCAAGATATAATCCAGATGCTTAACCTGCATAAAATGACCAGGTGTGAATGGCTTCATAGACCACCTCCTGCACTGGCAGTAGTGGTCAGATTTGTATCAGTTTtaagtgtgtttacacttgcatttttacGTGGCTTTGCCTTAaacagatataatcctgatactcaagatgcattaagtgaccaggtgtaaacaggatcTTAGATTTCAGTGGTAGCTCCAGTGCAAAGACTACAAAAGAAATGAAACCAAAGCCAAAACCCAAgcatgtcttggctgattgaCTGCATTTTGgggcttttttttaattaaacctcTCTGTAAGAAGAATATCAAGGGCCTAAATTGAGAATGCAAGGCTTTTGATGAAAGGTTCTGTATCGTTTACATTGATGTGCATGTTCAGACTTTGTATCCAGACATTGATTCAGACCCAAGTGAGAATGAAATCATAAAGTTTAAAACTTTACAGTCTATTTCCTTTGTCCTGTGCTGAGAGCTAGGATGAGGTTGAATATGTACGGGGCGTGTTTGCCTCTGCTGCTCTTATtgaaaactgctgttgatgAGAATAGCATTTCCCTGAGGTtgcttttcaataaaaaaatcttaagatAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57746 lncRNA upstream 557977 15421152 ~ 15421453 (+) True G42814
TU57745 lncRNA upstream 558308 15420712 ~ 15421122 (+) True G42813
TU57740 lncRNA upstream 564241 15414677 ~ 15415189 (+) True G42810
TU57739 lncRNA upstream 564241 15414877 ~ 15415189 (+) False G42810
TU57736 lncRNA upstream 600822 15378001 ~ 15378608 (+) True G42807
TU58039 lncRNA downstream 50566 16035198 ~ 16037119 (+) True G43035
TU58078 lncRNA downstream 267299 16251931 ~ 16253694 (+) True G43063
TU58077 lncRNA downstream 267591 16252223 ~ 16261729 (+) True G43062
TU58119 lncRNA downstream 406798 16391430 ~ 16398266 (+) False G43097
TU58121 lncRNA downstream 406798 16391430 ~ 16396001 (+) True G43097
XM_007240193.3 mRNA upstream 2757 15963205 ~ 15976673 (+) True ptbp1
XM_022669694.1 mRNA upstream 21669 15948996 ~ 15957761 (+) True LOC103035507
XM_022669693.1 mRNA upstream 34234 15931709 ~ 15945196 (+) True misp
XM_007240195.3 mRNA downstream 70027 16054659 ~ 16200071 (+) True LOC103036428
XM_007240196.3 mRNA downstream 331955 16316587 ~ 16352239 (+) True LOC103036728
XM_007240198.3 mRNA downstream 374085 16358717 ~ 16365153 (+) True LOC103037033
XM_022669696.1 mRNA downstream 374085 16358717 ~ 16365153 (+) False LOC103037033
XM_007240197.3 mRNA downstream 374085 16358717 ~ 16365153 (+) False LOC103037033
TU57395 other upstream 1080182 14895062 ~ 14899248 (+) True G42605
XR_002649939.1 other upstream 2357388 13617083 ~ 13622042 (+) False LOC103034435
TU56827 other upstream 2528953 13448592 ~ 13450477 (+) True G42208
TU56657 other upstream 3264402 12705559 ~ 12715028 (+) True G42096
TU56588 other upstream 3346001 12632816 ~ 12633429 (+) True G42068
TU58501 other downstream 1208906 17193538 ~ 17196116 (+) True G43360
TU58763 other downstream 2027541 18012173 ~ 18014499 (+) True G43537
TU58814 other downstream 2202407 18187039 ~ 18240232 (+) True G43568
TU59278 other downstream 3738002 19722634 ~ 19770324 (+) False p3h2
TU59277 other downstream 3761981 19746613 ~ 19770324 (+) False p3h2

Expression Profile