RNA id: TU58127


Basic Information

Item Value
RNA id TU58127
length 1039
lncRNA type sense_over
GC content 0.40
exon number 6
gene id LOC103040819
representative False

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 16440931 ~ 16446287 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCAGCGAAACTGCAGAGCGCTCACCTGCTTCACTACTGATGTCCGCGTTCATATTTACTGCTTTTAATCCTTTAAAATAACCTTTATTAACTCTGTTCACAATGCTGTCTATTTTCACTAAGATAAAAACGCGCGTGGAGGCTTTTCTCAACGAGAAGAACATCGTCACGGACTGTTTGAACAAAATCGAGGAAAAGACTGGAATTAAAAAGCGCTACCTGGCCATAGGAGCTGTTTCTGTTACTGGACTGTATCTGTTGTTTGGGTATGGAGCCTCCCTGCTCTGCAACTTGATTGGTTTTGTTTATCCTGCATATTTCTCTGCCTGTTCTTGTTGTGGTGCATGGCCCCCTTCTCCTGGAATGGCTCTCAGGTGCTGTATAATCACTTAGTACGGCCATTTTTCCTCAAGCATGAGGCGACTGTGGACAACATGGTCAGCGACCTTAGTGGGAAGGCCATGAACGCTGCAGAGTCTGTCACAAGAGAGGTTATTCAGAGTCTGGCGAAAAACAGGATTCCCTTATCTGAGAGAATGGATACATCCAAACAGCTTCCCAGTACATCTCGTAATGAACCCACTGTAGACTAAAATCTTTGCAGGTAACTGCATCCTCTCAGGTGAACTCATGACCTCTTAGATGCAAATCAACCACCAGGACTTCAGCAGACACAAGGACTTATACACAATGGGATTGAATATGTTGTGTTATGTAAGATACATTATGTAAAATACAAATAGATTGGTGACAACTCAGTGTTTCATTTCAATCCTGTATTATTTAAGGTAGTATCTGAATACTGTAGAATTAGAATAACTGTGGATAACAATAATAACTGTTTCAGTTTTAGCTGTACTGTTTTCACTTCAAAAATGTGCTTTAATGCAATGGAAGTCTTCAACTCTGCTGGACAGGATATTTTCTATAAAATGTCCTATTTTAATGTGTACACCTTTTCCTAGTATATCAGATCAGCCAAACATTCCTCTCCTTTTAGGTACAGACCACATAATAGAACACAATACAACTAACATTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58119 lncRNA upstream 42704 16391430 ~ 16398266 (+) False G43097
TU58122 lncRNA upstream 42704 16393772 ~ 16398266 (+) False G43097
TU58121 lncRNA upstream 44969 16391430 ~ 16396001 (+) True G43097
TU58077 lncRNA upstream 179241 16252223 ~ 16261729 (+) True G43062
TU58078 lncRNA upstream 187276 16251931 ~ 16253694 (+) True G43063
TU58172 lncRNA downstream 69512 16515657 ~ 16530444 (+) True G43136
TU58201 lncRNA downstream 256105 16702250 ~ 16704192 (+) True G43163
TU58225 lncRNA downstream 269415 16715560 ~ 16715795 (+) True G43180
TU58230 lncRNA downstream 276294 16722439 ~ 16722646 (+) True G43185
TU58233 lncRNA downstream 301681 16747826 ~ 16748678 (+) True G43188
XM_007240205.3 mRNA upstream 6890 16414203 ~ 16434080 (+) True LOC103039257
XM_007240204.3 mRNA upstream 28962 16399544 ~ 16412008 (+) True thop1
XM_007240198.3 mRNA upstream 75817 16358717 ~ 16365153 (+) True LOC103037033
XM_022669696.1 mRNA upstream 75817 16358717 ~ 16365153 (+) False LOC103037033
XM_007240197.3 mRNA upstream 75817 16358717 ~ 16365153 (+) False LOC103037033
XM_007240209.3 mRNA downstream 575 16446720 ~ 16449054 (+) True c5h19orf25
XM_007240206.3 mRNA downstream 59870 16506015 ~ 16525082 (+) True LOC103039567
XM_007240214.3 mRNA downstream 252846 16698991 ~ 16701356 (+) True LOC103042034
XM_007240215.3 mRNA downstream 252846 16698991 ~ 16701356 (+) False LOC103042034
XM_007240217.3 mRNA downstream 261909 16708054 ~ 16712430 (+) True ndufa11
XR_002649941.1 other upstream 456338 15979430 ~ 15984632 (+) True LOC103036127
TU57948 other upstream 457445 15978569 ~ 15983525 (+) False LOC103036127
TU57395 other upstream 1541722 14895062 ~ 14899248 (+) True G42605
XR_002649939.1 other upstream 2818928 13617083 ~ 13622042 (+) False LOC103034435
TU56827 other upstream 2990493 13448592 ~ 13450477 (+) True G42208
TU58501 other downstream 747393 17193538 ~ 17196116 (+) True G43360
TU58763 other downstream 1566028 18012173 ~ 18014499 (+) True G43537
TU58814 other downstream 1740894 18187039 ~ 18240232 (+) True G43568
TU59278 other downstream 3276489 19722634 ~ 19770324 (+) False p3h2
TU59277 other downstream 3300468 19746613 ~ 19770324 (+) False p3h2

Expression Profile