RNA id: TU58232


Basic Information

Item Value
RNA id TU58232
length 1166
lncRNA type sense_over
GC content 0.40
exon number 4
gene id LOC103044285
representative False

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 16816601 ~ 16819251 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCAGAAGTGCAGTGGATCCTCAAAGTGAACAGaagcaacagcagcagaactCCTACTGGCTCTCTCTCACGACTTCCTAAGACAAGAAAGATCAGAGGATAAAGCCAAGCCATGAAGACTCATGCTCTCTTCTTCCTCCTGCTCCTGGCTTGCATGTACCCAAGCTTGGCACAAGGTACTTACGAAAACTGCTGCTTAAAGTATGCTAACGAGGTGAAAGCCAACGTGAAGAAAAGGATTGTGAGCTACAAAGTTCAGCAAACTGACGGGGGGTGCAACATCGCTGCTGTTGTATTCAAGCTGAAGAAAGGGAGAACATTCTGCGGTGACCCCCAACAGCCATGGGTGAAGGAtctgatgaaaaaaaacaaacgtaTCTAAAATCACCACTCTGGGAGCCATAATGATATTTTGAGACCTAGTCTTTCCTACGGTCTTCACACTGTGGCATGATCACCATGAGCAATGTCACCAAGATCCTGCGCTATGACTGAGCATCTACAGCTCATATCCTTAATGTAGCCTATTACTCACTGTAAGGAATGTAGAGCCATGTGGAGAAATGTGGAGAAATGTAGAGAAATGTGGAGGAATGTGGAGGAATGTGTGAGGTGGGTTGTAAGTGCACAAGTTTCTTTAAGCTTCACTCTGAGCCTTGTATTCATAATCAAAAACCGTGAATAATGAtatgaaattaatttaatacCTACGCCACACATTTCCACTCAAGCTGCGCAGAGAGCAAAGGCAGCGTATGCAGACTTCATGTCTTTTGAATGTCTGTACTGCAGTTCAATGTGCACATAtagttttttatgtgtttttaaaatgatcatGTTTTATATGCTGCCGCTCTGAATGTCGTGCTACTGCACTCCCAGTGTTTAGTcctgtctgttttgttttctaagATATGTTTGAATCTTTTTGAGACAGATGTTGTTGAgcctttatacattttttacagaacaattttttttaccatttaaattttttcttATGCATTAAATGACATATAATATTGTGCCATAAGTGTCACAAGTCTAAATgtgaaagagacaaagaaagagatgtCGAGAGAAGTCTGTAATGAGTTTGTttgtaataaaatactaaaatcacAATGATCTTTTgtatcattttctctctttataaatctctttaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58242 lncRNA upstream 29029 16786571 ~ 16787612 (+) True G43196
TU58233 lncRNA upstream 67963 16747826 ~ 16748678 (+) True G43188
TU58230 lncRNA upstream 93995 16722439 ~ 16722646 (+) True G43185
TU58225 lncRNA upstream 100846 16715560 ~ 16715795 (+) True G43180
TU58201 lncRNA upstream 112449 16702250 ~ 16704192 (+) True G43163
TU58244 lncRNA downstream 19240 16838491 ~ 16843005 (+) True G43198
TU58277 lncRNA downstream 129939 16949190 ~ 16949980 (+) False LOC111192574
TU58309 lncRNA downstream 193235 17012486 ~ 17017856 (+) False dda1
TU58307 lncRNA downstream 211258 17030509 ~ 17031395 (+) True G43233
TU58328 lncRNA downstream 219320 17038571 ~ 17047109 (+) True G43248
XM_007240218.3 mRNA upstream 57004 16727199 ~ 16759637 (+) True nrtn
XM_007240217.3 mRNA upstream 104211 16708054 ~ 16712430 (+) True ndufa11
XM_007240214.3 mRNA upstream 115285 16698991 ~ 16701356 (+) True LOC103042034
XM_007240215.3 mRNA upstream 115285 16698991 ~ 16701356 (+) False LOC103042034
XM_007240206.3 mRNA upstream 291559 16506015 ~ 16525082 (+) True LOC103039567
XM_007240224.3 mRNA downstream 32841 16852092 ~ 16856550 (+) True pole4
XM_007240222.2 mRNA downstream 40871 16860122 ~ 16863161 (+) True LOC103044574
XM_007240231.3 mRNA downstream 112249 16931500 ~ 16936906 (+) True babam1
XM_022669703.1 mRNA downstream 112869 16932120 ~ 16936906 (+) False babam1
XM_022669704.1 mRNA downstream 126039 16945290 ~ 16946977 (+) True plvap
XR_002649941.1 other upstream 832009 15979430 ~ 15984632 (+) True LOC103036127
TU57948 other upstream 833116 15978569 ~ 15983525 (+) False LOC103036127
TU57395 other upstream 1917393 14895062 ~ 14899248 (+) True G42605
XR_002649939.1 other upstream 3194599 13617083 ~ 13622042 (+) False LOC103034435
TU56827 other upstream 3366164 13448592 ~ 13450477 (+) True G42208
TU58501 other downstream 374287 17193538 ~ 17196116 (+) True G43360
TU58763 other downstream 1192922 18012173 ~ 18014499 (+) True G43537
TU58814 other downstream 1367788 18187039 ~ 18240232 (+) True G43568
TU59278 other downstream 2903383 19722634 ~ 19770324 (+) False p3h2
TU59277 other downstream 2927362 19746613 ~ 19770324 (+) False p3h2

Expression Profile