RNA id: XM_007240239.3


Basic Information

Item Value
RNA id XM_007240239.3
length 2607
RNA type mRNA
GC content 0.42
exon number 5
gene id dda1
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 17012467 ~ 17017856 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agttagctaagttagcttgtGGCGTTTTGAGCGCAGTGCGTCTGCTTTACTTTACGCGAGGCTGTTTGAGGGTGTTAGGCTCCGTTTTCCCCCTCAGAGCCCGAGCTGCGGTTTATTTCGTGAGGGACAGATAGTCAGCAGCAGCGGACGGGGTCAGAGAGTTGAGCCCCGGCTGGGCGGACAGTAGTTTTTCTTGTTTAAGGCGTTTCTGGGTCTGTTGTGTGGATTTGTCTGAGCGGCGGTGTGAAGTCTAGCCGGTGTAGTGTAGGGGCGCACTGGGCCCTGTGCTACTGTTAGCATAGCTGCGAGAGGACCGTCTCTAGGGCAGAATTCTGAGATTCAGCGCTGAAAAGGCGAAACGATGGATAAAGCGGATTTCCTGAAAGGTCTCCCTGTATACAACAAGACCAACTTCAGTAGATTCCATGCGGACTCTGTTTGCAAAGCATCGAATAGAAGACCGTCAGTATATCTGCCTACACGGGAATATCCCTCGGAGCAGATTATTGTTACAGAGAAAACAAATATTCTTCTGCGCTACCTTCATCAACAGTGGGACAAAAAgaaTGCAGCTAAGAAGCGGGAGCAGGAGCAGGGAGAAGGAGGAAGTCCTGCACCTCCACGCAAAATCGCCCGGACTGACAGTCAAGAAATGAACGAAGACTCCTAAATGGGATCGTTACCAAACAGCACAAGGACAGGCACAAAAATGACAGCCGTTTCAGAAGTTCATAATACCTTGTCTACATATTTATGTAGACACCTGCACATGAGACTGGAAtttacttaaagaaaaaaaaaacacaagaaagagATTGAAAGTGAGCAAGACCCTTTTTTATggtgtgcttttttatttttattaagcgCTTCCTGTCAACCTGTCTCCTTTTGTGTATCCTTACAACCTAGTGTTAAACACTTGGGGGCGCTATTAGCTTCCACTGCCAGATTCTGTGGGCCTGGTGTGCTGTAGATTGCTCAGGAAGGATGGGGAGACTTATGGGCAAGCTCTAAGATGCATCAGAAGTATTTGGCAAGGTATGGAAAGCTTAGACTGCATCACAGTTGTGCGCAAGTGTGTTTGTAAATTATAATGTCTGACACTGACTAGAGGGCCGCTTTGATCTCTGATCACTGATGGTCTTATGTGAACACCATCACTGCTAGCtcagctatgttttttttttttttgctttctgtaCGGACAGTGCCTAGCAGACACTTCGGTTCATACATGTAAGACAACTTTAATCTGGAGATTCATCGATATAGGAGATTTGGTGCAAGTCATGTAAGACCTGACTCCCTGGCTTCGATTATGACTTGAAGAGGTCACATCAGTACTGGTTTGGATATGAAAAACAACCAACAGACTAAGAACTAttattttgttctgttattaGTACCTTCAGCTGATATAAAATTATTTGTGATTTGGAGGCATTGGGATTTCTCATCCAGTGCTTTATTCAGATTGTTGACCTTGGTGGACAGCCCTGTCTGCTGGACCAGTTTGGATCCTTTTTGCCTTTTGGTAGTTTTCCCCAGCTTAGATAACGGTAGTGCTAGTTTTACAGGCCTACGCGTTTATTGTCCTGCTCCAGTTCTTGTTGCACTTGGAGctatgcaggtttttttttgtttttgtttgttgtctTTTGATGGGCTTGACTCAGTATGAATAAATGATCAGGTTAGTAATAACTAACAGCAGATTAAGTCAGTTGAAGGAGCTCTATGCATGTGGCTTACCTGTGTGTCTCACCTGGTATGAGGTGAGCACAGTGTACCTGAACTGTGTCCCTTCTACTGTGTTCAGACCACTGCGTTTGGAAGCATTACGTGAGGAAGTGCTAAGGTGTGTCAGTAGTTTCTCTAAGTGCTCCTTCGCCCCTTTTGTTATGTGTTTGatctattattaaaatgttgaatTGCAGATGAAGCCAGTATTATTGGCTAAGCATGTATGTTTTATGGCAACAACAATTGACTTTGGATTTTGGCAATAGAAGGCACTGTTGATTTAAAAGCTAGTTTGTGAGAAAAGGGGGTGCTGATGGCTTTTAGAATTAAAAGATAAGTCATTATTACATACAACCCACTAAAATACCAAACACCTTCCCATAACCTTGTGCacataatttacataatttacaaCCCTGTCCACCATACCTTTAGCACTGCATCATGCGTTACACTCAAGTTGTTCAAAACAAGCTAGGAAACCTCACAAGGCTGATTGCCTTGCTAAATAATGAGCATAATTTGCTCCCCTTTGTCCTCATAGAACCACAGTTTAATCAGTTTAGGTTTAAACCTTATCTACACATTGTAAACACAAACAGCTGCtacatttctttcattctcGTGTCATATTGTCTGCTTCTGTTTGCTCCAACCCACAAGCTCAAGAATATATAGCTATGTTCCTGCCTTATTTAATATGTGGCGTGCATACAGAATACAAACCTCCAAGATGTCGCTTGTCTCTTTCATAATTGTGTACAAGTGAACCCCTGATTTGTATTTTCTCCTGAAAGCCTTCCCAATTTCTTTATACATTAGGTCAACATTGTCTTTgaggaattaaaataataataataa

Function

GO: NA

KEGG:

id description
K11792 DDA1; DET1- and DDB1-associated protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58277 lncRNA upstream 62487 16949190 ~ 16949980 (+) False LOC111192574
TU58244 lncRNA upstream 169462 16838491 ~ 16843005 (+) True G43198
TU58232 lncRNA upstream 193216 16816641 ~ 16819251 (+) False LOC103044285
TU58242 lncRNA upstream 224855 16786571 ~ 16787612 (+) True G43196
TU58233 lncRNA upstream 263789 16747826 ~ 16748678 (+) True G43188
TU58307 lncRNA downstream 12657 17030509 ~ 17031395 (+) True G43233
TU58328 lncRNA downstream 20719 17038571 ~ 17047109 (+) True G43248
TU58332 lncRNA downstream 40557 17058409 ~ 17060901 (+) True G43251
TU58333 lncRNA downstream 42149 17060001 ~ 17063971 (+) False G43251
TU58334 lncRNA downstream 47495 17065347 ~ 17072232 (+) True G43252
XM_007240234.3 mRNA upstream 1942 16975644 ~ 17010525 (+) True ano8
XM_007240235.3 mRNA upstream 1942 16975644 ~ 17010525 (+) False ano8
XM_022670155.1 mRNA upstream 62107 16948380 ~ 16950360 (+) True LOC111192574
XM_022669704.1 mRNA upstream 65490 16945290 ~ 16946977 (+) True plvap
XM_007240231.3 mRNA upstream 75561 16931500 ~ 16936906 (+) True babam1
XM_022669705.1 mRNA downstream 477 17018329 ~ 17027124 (+) False abhd8
XM_007240237.3 mRNA downstream 2769 17020621 ~ 17027124 (+) True abhd8
XM_022669715.1 mRNA downstream 35559 17053411 ~ 17057107 (+) True gamt
XM_007233135.2 mRNA downstream 229229 17247081 ~ 17253787 (+) True tmem38a
XM_022669728.1 mRNA downstream 241513 17259365 ~ 17269526 (+) True comp
XR_002649941.1 other upstream 1027835 15979430 ~ 15984632 (+) True LOC103036127
TU57948 other upstream 1028942 15978569 ~ 15983525 (+) False LOC103036127
TU57395 other upstream 2113219 14895062 ~ 14899248 (+) True G42605
XR_002649939.1 other upstream 3390425 13617083 ~ 13622042 (+) False LOC103034435
TU56827 other upstream 3561990 13448592 ~ 13450477 (+) True G42208
TU58501 other downstream 175686 17193538 ~ 17196116 (+) True G43360
TU58763 other downstream 994321 18012173 ~ 18014499 (+) True G43537
TU58814 other downstream 1169187 18187039 ~ 18240232 (+) True G43568
TU59278 other downstream 2704782 19722634 ~ 19770324 (+) False p3h2
TU59277 other downstream 2728761 19746613 ~ 19770324 (+) False p3h2

Expression Profile