RNA id: TU58763


Basic Information

Item Value
RNA id TU58763
length 2294
RNA type TUCP
GC content 0.42
exon number 2
gene id G43537
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 18012173 ~ 18014499 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttattgctattaaacttaaaaatcaTCACCCGGAATAAAAAAATTCCAGGCATAAAATGATATTTGGCATTGTGAAATGAAGCTAAAGGAGAAATAAATGGTTTTATTAGCATAGACTTATCATGATCTTCATattctttagaaaaaaaacatgttgcaTGGCAAAGGATACTGTTTCTggagaaaacaacaaaataaaaccaaacaaacaaacaaaaaaacgacAACAATCAGCCCGCAGATTTTAGCATTTACAGGGACACATTCTACCTGAATATGAACTACTGGGAGCTTCCTCCAATTCTTACAATTCTAACACTACCTACTGTCATACAGAGCATTCTATTTAATTAGTAACAAGTCTTTTTAACACATTACTGGTTGTGCTTAGTGTTGGCACGCCACAGTCTGCGCTGGCACTTGCATGAGGGCTGACAAAATATAGGGGCATAGCTGCTAAAACACCAACATGGCagttagttatttttattttttttatctctatcTAGATACAAAGCAAAGCTCTGCAGTTAGTACTAACTTCATTCATCATTTCATTTTTCAATTCATAATCATTCCAATAAACCAAATACTTTtctaaaatgcaataaaaaaaatcctattatacatatatacttataataataaacacaactgacaatgcaatgttttaaaatcttaaatcaGTAGTGTAACGTGTGTAAACCGAAAGacatcttaaataaaataaatagaatcaCATAAATAAATTCAAGTATTTCTGATGTGCAGTCGTTTCCTCTTCGTCAGCAAACGTCAGCGCACAACTTTTAAAGGACTGTATCTAAACATGCACAAACGAGCGCCGCTGCGCTATCGGCCGCAGAGCCGCAGGACGGAAGCTTCGCCCCGACCGCAGGGATGCATATCAAACACGACATTCACTGAGGTTAAGATTGGCTCATTATTACatgactgaaaacaaaaaaaagccaatTTAAAGAACAAGGGAAGCCTTACAAAAAAACTTATCAGGAGAGAATTTGGCCtttccgaaaaaaaaaaaaaagagcaaagccaccttaaaaaaacaatCCTCTGTGCTGATATTCTTGAACTGCTTTCAAgataaatatgcattaaaactatgataaaaagtaatgtaaagtgacagtaaaaaattaagaataaaagatTAAAGCATATCGGACTAGGCATGAATGCAAAATCATTCAAgtcaaataaaaagaataaaaaagaaacagcaacAAAAGCTTGCAAACATATCATCATAcaatatcatcattattatcatcatcgtcatcattttaatcatcatcaatataatcagcagtagcagcagcagtaaaaaaaaaaaaaaaaaaaacgaaaaacagtagttttttttttttttttttaggtttggcTTTCATCATTGACAAACGGCATACGCACTAAATCCATTCCGTCTACATTTCACTGAAGCATTCACTTATTTTAATGAAGTTATTGGTGGAATTATTTCGCAGTCTCGGGCACGGATCCGAAGAAGGGCGAAGTGTTATTTTACAGTATCAGTATGGGCGATCACTGTACAGCAGACGGCTATTTTACAGCAGATCCACAGGGAAAGACCGAGCTGGAGGGAGAGAGACTGCCTAATCGTCTGCATCTGATGTGCCAACAAACGCGAACTAACGGGGCGGACTGGCAAATCCCTTTTCATATGCTTCCAGAGTTAGCGTGGCTCCCATGAGGAGGAGGGTTGGAGAGGGAAGGGAGAGGGGGGGTGGTGTCGGCGGTTAGCTGCGGTGCGGTGAGAGGAATCGAATCCGGTCCCCTTTTCCTCCTCGGGAGGCAGCGAGGGACCCGGCGGAGCATCAGAAGTGGCCCATGCGGGTGGTGAAGAGGCTACGAGAGCGCGGCGCGGCGGCGGAGGCCACGTTCCGGCCAAAGCTGGAGGAAGGCCACTTGATGATGAACTGGGAGGTCACTGGCAGCAGATACCTGCACAGACGGAGACGGGGGGGAAGAGGGAAAGGGGGTTTGGATGGGAGACCGCAGGAGGAGGCAGGATTAGAGCTGCAAAAGGTCGTGCAAAGAGATCAGGCAGCATTAACCCGGCCCTGCAATCtgacacagaaaacaaaacccACCCGCTTGCCCACCCGCCTGGACGGACGGATGGACGGGCGTCCACCTTCTTCTCTCATCCCTGCAACCATCCCATCAGCCCCATACTGTCCGACATCCTTTCGGacaccctccctccctccttccctccctctcctGCTTCCCCCTTGATCCCTCCTTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58683 lncRNA upstream 243219 17691788 ~ 17768954 (+) False adgrl2
TU58677 lncRNA upstream 243219 17736948 ~ 17768954 (+) False adgrl2
TU58705 lncRNA upstream 256016 17755308 ~ 17756157 (+) True G43483
TU58571 lncRNA upstream 525362 17483676 ~ 17486811 (+) True G43414
TU58579 lncRNA upstream 525362 17484275 ~ 17486811 (+) False G43414
TU58785 lncRNA downstream 127473 18141972 ~ 18143525 (+) False prkacb
TU58790 lncRNA downstream 130712 18145211 ~ 18151738 (+) False samd13
TU58792 lncRNA downstream 138361 18152860 ~ 18157853 (+) True G43561
TU58795 lncRNA downstream 152384 18166883 ~ 18167890 (+) True G43564
TU58798 lncRNA downstream 168691 18183190 ~ 18183786 (+) True G43567
XM_022669734.1 mRNA upstream 243221 17633096 ~ 17768952 (+) False adgrl2
XM_007233159.3 mRNA upstream 243221 17641563 ~ 17768952 (+) False adgrl2
XM_007233162.3 mRNA upstream 243221 17641563 ~ 17768952 (+) False adgrl2
XM_015601257.2 mRNA upstream 243221 17641563 ~ 17768952 (+) False adgrl2
XM_007233169.3 mRNA upstream 243221 17641563 ~ 17768952 (+) False adgrl2
XM_007233193.3 mRNA downstream 109247 18123746 ~ 18143539 (+) True prkacb
XM_007233194.3 mRNA downstream 109248 18123747 ~ 18143539 (+) False prkacb
XM_007233192.3 mRNA downstream 115866 18130365 ~ 18143539 (+) False prkacb
XM_007233195.3 mRNA downstream 130700 18145199 ~ 18152349 (+) True samd13
XM_022669751.1 mRNA downstream 133528 18148027 ~ 18152349 (+) False samd13
TU58501 other upstream 816057 17193538 ~ 17196116 (+) True G43360
XR_002649941.1 other upstream 2027541 15979430 ~ 15984632 (+) True LOC103036127
TU57948 other upstream 2028648 15978569 ~ 15983525 (+) False LOC103036127
TU57395 other upstream 3112925 14895062 ~ 14899248 (+) True G42605
XR_002649939.1 other upstream 4390131 13617083 ~ 13622042 (+) False LOC103034435
TU58814 other downstream 172540 18187039 ~ 18240232 (+) True G43568
TU59278 other downstream 1708135 19722634 ~ 19770324 (+) False p3h2
TU59277 other downstream 1732114 19746613 ~ 19770324 (+) False p3h2
TU59285 other downstream 1794243 19808742 ~ 19864143 (+) True G43923
TU59490 other downstream 2116608 20131107 ~ 20137056 (+) True G44070

Expression Profile