RNA id: XM_007233196.3



Basic Information


Item Value
RNA id XM_007233196.3
length 1452
RNA type mRNA
GC content 0.44
exon number 6
gene id dnase2b
representative True

Chromosome Information


Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 18159557 ~ 18166817 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


CTGCACATAGACACTTTTGCTATTGCCAAATCATGAGGAAGCCATGAGGCTCTTGACAACATGCTGGTTCTTTTTTTCACTCGTTTGGTGATTTTCGGAGGACAAATGCGTCTGTTTCTTTGTGTCTGTACGATTTTCCTTCAAGCATTCCCCTCTGGGTGCTTATCTGAGGCCAACCTATCCTGCTTAAATGAAGAAGGACAGCCGGTGGACTGGTTCATTATGTACAAGCTGCCCAAATATAAGAAAGGTGAGGTGGGAAGTGGAGTGGAGTACATGTACTTGGATGCTTCCATGCTGACCTGGAGGATGAGTCCATACGCGGTGAACACTAGTGATGGAGCTGTGGGTAGGACACTAGGCCGgctgtataaaacatataaaTCAAACAGCTCTGTATACATGCTCTACAATGATGctcctccactgctgaagtACCAGAGTAATTACGGACACTCAAAAGgCACGTTGCTATTTGACCGGTCTCAGGGATTCTGGATAACACACAGCATTCCTCACTTTCCTCCATTCCTTGAAATGGGCTTTGGCTACCCTTCCACAGGCAAACTCTACGGCCAGACTGTTCATTGTACAACCTACAGCTACGAACAGTTCAAAAAAATATcgcagcagcTGGCGTACATTAATCCTCGTGTATATAACTGCTCAGTGCCAGTGCCATATCACACAGATATGGCAGCCATGGCACAGCTATGCGGTGGCAAAAGACCAACTGTGGCGCCCAGGAGAAAGCTAGAGAAGCTAAAGTCAGCCCTGGGAGAGACTTTCCTCAGTTTCTCTAAATCACACCAATATGTTGATGACATTTATGCTGGTTGGGTGGCCCAAACACTGAGGACAGACCTGCTGGTGGAATCATGGCAACGGGATAACCACCAGCTTCCCTCAAACTGCTCACTCCCCTACCACGTGTTGAACATCAAGAGGGTCCATCTGCCAGAGAACATCACTTTCAGCTCCTACGAGGATCACTCCAAGTGGTGTGTCTCTGTAGAATTCAGAGCTCAGTGGACTTGTTTGGGGGACCTGAACAGAGAGAGTACACAGGCTTACAGGGGTGGCGGCCTCATCTGTTCCCAAAATCCAGTCGTCTACAAAGCCTTCCGCCAGGCTGTGGCCTGGTTTAAAGGCTGCTAGACACAAACACAAGAGACTTATTACTGTCAGCTTCAGAAGACTCAACTGGATGAGTGAAGTTAAGTCAAGTCATGAGGCTGAGAGGAAATGAATATTTgctttattgtaaattaataactAATGAAGCCCTCTTAAAATAAGGACAGTTTCAAATTATTTTCTTAGAAAATAATTTTTGAAAGAGTTGTGGAGTATTTCAATAAGTATTGAAGATTTTTAATTGAACTGAATGGACAGTTAGGTATTTATGTtcattcactatttattaatttaaaaaaaaaaaaaagcctgagc

Function


GO:

id name namespace
GO:0006259 DNA metabolic process biological_process

KEGG:

id description
K01158 DNASE2; deoxyribonuclease II

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU58792 lncRNA upstream 1704 18152860 ~ 18157853 (+) True G43561
TU58790 lncRNA upstream 7819 18145211 ~ 18151738 (+) False samd13
TU58785 lncRNA upstream 16032 18141972 ~ 18143525 (+) False prkacb
TU58683 lncRNA upstream 390603 17691788 ~ 17768954 (+) False adgrl2
TU58677 lncRNA upstream 390603 17736948 ~ 17768954 (+) False adgrl2
TU58795 lncRNA downstream 66 18166883 ~ 18167890 (+) True G43564
TU58798 lncRNA downstream 16373 18183190 ~ 18183786 (+) True G43567
TU58823 lncRNA downstream 82637 18249454 ~ 18251731 (+) True G43574
TU58917 lncRNA downstream 145956 18312773 ~ 18313342 (+) True G43638
TU58966 lncRNA downstream 297109 18463926 ~ 18464608 (+) True G43675
XM_007233195.3 mRNA upstream 7208 18145199 ~ 18152349 (+) True samd13
XM_022669751.1 mRNA upstream 7208 18148027 ~ 18152349 (+) False samd13
XM_007233193.3 mRNA upstream 16018 18123746 ~ 18143539 (+) True prkacb
XM_007233194.3 mRNA upstream 16018 18123747 ~ 18143539 (+) False prkacb
XM_007233192.3 mRNA upstream 16018 18130365 ~ 18143539 (+) False prkacb
XM_007233200.3 mRNA downstream 2876 18169693 ~ 18175127 (+) True rpf1
XM_007233199.3 mRNA downstream 10130 18176947 ~ 18181454 (+) True ctbs
XM_022669753.1 mRNA downstream 32522 18199339 ~ 18203357 (+) True LOC111192515
XM_022669752.1 mRNA downstream 72437 18239254 ~ 18246244 (+) True LOC103045882
XM_022669756.1 mRNA downstream 223256 18390073 ~ 18405402 (+) False ddx59
TU58763 other upstream 145058 18012173 ~ 18014499 (+) True G43537
TU58501 other upstream 963441 17193538 ~ 17196116 (+) True G43360
XR_002649941.1 other upstream 2174925 15979430 ~ 15984632 (+) True LOC103036127
TU57948 other upstream 2176032 15978569 ~ 15983525 (+) False LOC103036127
TU57395 other upstream 3260309 14895062 ~ 14899248 (+) True G42605
TU58814 other downstream 20222 18187039 ~ 18240232 (+) True G43568
TU59278 other downstream 1555817 19722634 ~ 19770324 (+) False p3h2
TU59277 other downstream 1579796 19746613 ~ 19770324 (+) False p3h2
TU59285 other downstream 1641925 19808742 ~ 19864143 (+) True G43923
TU59490 other downstream 1964290 20131107 ~ 20137056 (+) True G44070

Expression Profile