RNA id: XM_007233199.3



Basic Information


Item Value
RNA id XM_007233199.3
length 1370
RNA type mRNA
GC content 0.45
exon number 7
gene id ctbs
representative True

Chromosome Information


Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 18176947 ~ 18181454 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


TGATTATCTCGTGATTTCTCGCTGAGTTCTGCTGTACAGCGCTGATGTGGTTCTCCGTGTTTGTCGCCGTCGCTGTGGGTCTATCCGGGGCTCGCGCCGCGGCCGTGTGTCCCTGCGCTCGAGAGGAGCTCTGTCAGCCGGTCCAGCATGAGCACGAGCTGGAGGTGTTTGTATTTGATGTTGGGGGAAAAACATGGAAATCTTATGACTGGTCAAAGGTGACGACTGTCGCTGCCTTTGGAAAGTACGACGCTGAGCTCATGTGTTATGCTCATTCCAAAGGAGCCCGTTATGTACTGAAAGGTGATGTGTCTCTGTCTGATATCGTGGATAATGCAAAGAGGGCCGCTTGGATCAAGGAAAAGGTCAGTTTGGCTAAGAACCAGTTCATGGATGGAATTAACCTTGACATCGAGCAGGCTGTAGAGCAGTCTTCACCGGAGTACTATGCTTTGACATCCCTTGTCAAAGAGACCACAGATATGTTCCATCAAGAAATCCCAGGCTCTCAGGTGTCGTTTGATGTGGCTTGGTCACCCAAGTGCATTGATAAGCGCTGCTATGACTACAATGCTATTGCGAATTCCTGTGACCTCCTCTTCGTAATGTCTTACGATGAACAGAGTCAGATCTGGGGCGACTGCATTGCCATGGCAAATTCACCATTCAATCAGACGTTAACAGCATATGATGAGTACATTGGGATGAAAATTGATCCAAAGAAGCTAGTGATGGGAGTTCCATGGTATGGATATGACTACACATGTCTAAATCTCTCACAGGAAGGGGTTTGTACAATTCCTAAGGTGCCTTTCAGAGGAGCTCCTTGCAGTGACGCGTCTGGAAAGCAAATACCATACAGAACTATGATGAAACAGGTCAACAGCTCCACATCTGGGCGACTTTGGGATGAGATCCAGAAGGCTCCTTACTATAATTATAAGGATAAAGTTGGGAAGCTCCATCAGGTGTGGTATGATGACCCAGAGAGCATCTCtttgaaggcagcatatgtgGCAAAGCAGGGTTTGAGGGGGATCGGCATGTGGAATGGAAATCTACTTGATTACAGCAACGACCCAGTCGCCAAGCAGCAAAGTGCTGATATGTGGAACGCCCTCATACCAAATCAACCAATGTCAGTGATGGTCTCCTAGGATCTTGTGTTCAACCAACCTTGTTTTCGACGTCAAACTTAGCCTCAGATGTTAAATTGGAAGGGATTTAGGGATTTGTTGTTAATCCTATTCTATATTTTCCTAAAATTATTCTGTACCACATACTGATTTTTAAAAGTCTTGTTGCACTTTTGTAATTCaaaattaaatgattacatttttgaaaaaaaaaaatcaatgaataTGACCATA

Function


GO:

id name namespace
GO:0006032 chitin catabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0004568 chitinase activity molecular_function

KEGG:

id description
K12310 CTBS; Di-N-acetylchitobiase

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU58795 lncRNA upstream 9057 18166883 ~ 18167890 (+) True G43564
TU58792 lncRNA upstream 19094 18152860 ~ 18157853 (+) True G43561
TU58790 lncRNA upstream 25209 18145211 ~ 18151738 (+) False samd13
TU58785 lncRNA upstream 33422 18141972 ~ 18143525 (+) False prkacb
TU58705 lncRNA upstream 420790 17755308 ~ 17756157 (+) True G43483
TU58798 lncRNA downstream 1736 18183190 ~ 18183786 (+) True G43567
TU58823 lncRNA downstream 68000 18249454 ~ 18251731 (+) True G43574
TU58917 lncRNA downstream 131319 18312773 ~ 18313342 (+) True G43638
TU58966 lncRNA downstream 282472 18463926 ~ 18464608 (+) True G43675
TU58963 lncRNA downstream 342320 18523774 ~ 18526441 (+) True G43672
XM_007233200.3 mRNA upstream 1820 18169693 ~ 18175127 (+) True rpf1
XM_007233196.3 mRNA upstream 10130 18159557 ~ 18166817 (+) True dnase2b
XM_007233195.3 mRNA upstream 24598 18145199 ~ 18152349 (+) True samd13
XM_022669751.1 mRNA upstream 24598 18148027 ~ 18152349 (+) False samd13
XM_007233194.3 mRNA upstream 33408 18123747 ~ 18143539 (+) False prkacb
XM_022669753.1 mRNA downstream 17885 18199339 ~ 18203357 (+) True LOC111192515
XM_022669752.1 mRNA downstream 57800 18239254 ~ 18246244 (+) True LOC103045882
XM_022669756.1 mRNA downstream 208619 18390073 ~ 18405402 (+) False ddx59
XM_007233216.3 mRNA downstream 218387 18399841 ~ 18405402 (+) True ddx59
XM_015601269.2 mRNA downstream 225106 18406560 ~ 18423568 (+) True kif14
TU58763 other upstream 162448 18012173 ~ 18014499 (+) True G43537
TU58501 other upstream 980831 17193538 ~ 17196116 (+) True G43360
XR_002649941.1 other upstream 2192315 15979430 ~ 15984632 (+) True LOC103036127
TU57948 other upstream 2193422 15978569 ~ 15983525 (+) False LOC103036127
TU57395 other upstream 3277699 14895062 ~ 14899248 (+) True G42605
TU58814 other downstream 5585 18187039 ~ 18240232 (+) True G43568
TU59278 other downstream 1541180 19722634 ~ 19770324 (+) False p3h2
TU59277 other downstream 1565159 19746613 ~ 19770324 (+) False p3h2
TU59285 other downstream 1627288 19808742 ~ 19864143 (+) True G43923
TU59490 other downstream 1949653 20131107 ~ 20137056 (+) True G44070

Expression Profile


XM_007233199.3 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 125.
End of interactive chart.

XM_007233199.3 Expression in each Bioproject

Bar chart with 7 bars.
XM_007233199.3 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1250.
End of interactive chart.