RNA id: XM_007236235.3


Basic Information

Item Value
RNA id XM_007236235.3
length 3296
RNA type mRNA
GC content 0.42
exon number 3
gene id slc35c1
representative False

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 1865392 ~ 1871930 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TATACCTGTTTCAGTGTTATTGATGCGGTCCTGCAGGTAAGTCCGGGTCTGTGCTACCTGCCTGCCTGCTTTCTGAAGGAGgagttttaatacatttacttcCTCATCTGACAGCAGCGGGTCCGGAAGGCAGCTATTCATGACTGTATGATACAATAAGgattcagcTGAAACGCTCCAGGATCTTGAGGATGGCTCTGAATGACTCGGGTCCTGCGGATCAGGAGGGCAGGGAGCCTTTCTTGGTCCGGGCGGTGAAGATAGCCCTGGTGGTGGCTCTCTACTGGTTCGTGTCCATCACGATGGTGTTCCTCAACAACTACCTGCTGGACAGTAAGGACCTGGACGCCCCGCTCTTCGTCACCTTCTTCCAGTGCAtggtgtctgtctgcctgtgcGGGGTCATGAACGTGCTCTCCATCATGTACCCATCCTGCGTGGACTTCCCCTCCATCAAAGTGGACCTGAAGGTGTCCCGGGAGATCATGCCCCTGTCCGTGGTCTTCATCTCCATGATCACCTTCAATAACCTGTGCCTGAAGAACGTGGGGGTCGCCTTCTACACCGTGGGTCGGTCCCTGAGCACGGTCTTCAACGTGCTGCTGTCCTACGTGATCCTGAAGCAGACCACCTCCATGTACGCGATGCTGTGCTGTGGGGTCATCCTTGGTGGTTTCTGGCTCGGTGTGGATCAGGAAGGTGAAGCGGGCTCCCTCTCGTGGTCCggtgtgttttttggtgttcTTGCCAGTGCCTGCGTCTCCCTAAACGCCATCTACACAAAGAAGGTGATGCCAGTTGTGGACGGAAGCATCTGGAAGCTGTCCTACTACAACAACCTAAACGCCTGCGCCCTGTTCCTACCTCTTATGATCGTGTTCGGGGAGTTTGGACGCCTGGCTTCGTTCTCCCAGCTATTGAACATGAACTTTTGGGGTATGATGGTGGTGGGTGGAGTCTTTGGCTTTGCCATTGGTTATGTTACAGGCCTGCAGATAAAGTACACCAGTCCGTTAACGCACAATGTGTCTGGCACAGCCAAGGCGTGTGCTCAGACTGTGCTGGCAGTGATGTATTACCACACCAGCAAAAGCGGACTGTGGTGGACCAGTAACCTAATGGTGCTGGGAGGATCTTCTGCATACACGTGGGTCAAAGGCCTGGAGATGAAGAaaccttctcctcctcctcgggAATCTTCAGAAGATGAAGAGAAGCTGTTAAAAGGGGACTCTGGagtgtaaaagaaagaaaaactctCTCTTTCGTGCtggaatgtaaaaaagaaacataatgTTGTCAtcaagatgatgatgaagatgaactTCGCTGTTTGGCGAAAAGGGACCAGTGGGGAAAAACAGTCCATTTGGAAAAGAAATTAgaatcatatatttttaagaaaagcTCCAGCATTTTTCAACCTATGTCAATGTCTTTTCCTgcttctgtactgtactgttgaAACACAGACAATTGTTTCAGcacattttacaatatatagaGCTGCAAGAACTAAAAGCTTGTTTACTTTAAACACATATGTATGATGGAAGTCAATGAGCAGTTAGTCgatattttacacaaattaacCTGAGGAATATTGTGGCTGTGAAGTGAAGTACACAATATTAACAGCTGTTACTCTCAAAATGACCGAATGCAGTTTTGGAACAGTCACTGTGTTAGTGGTGTACTATATCATCACTGTTATGCAACAACCATGtgtctctatttttttgttttacacttaTAAATCTTGTAGgtgttctttatattgtattcaagttttatgtttaatggaccaataatcattttttttttttttttttacattttggagACGACAACAAAATAAGGGCCAACTTTTATGTAAAAATTCATGAATCAGTACTTTCCCATTATTAGCTTGCGTCAGCCTTCGCCAGTCACATAAACAGACCATAGCATTGGTGTTTGTGCGAGACAACATGCAAAAacaggggaaaaaaaggaaaactgaCTAGGCAAGATGCTAGATCCAGTGTCTGAACCTGCAGTTAGTGTTTCTGCTGGATaatgagcagcagcagcaaacaCAATACAGTcttgtttttaactgtacagggCTGCTGCTATTTCCTCATTCAGTTGCTGTAGTGACATACAGTATCTAACAAATGAGCACACCCCTCACacttttgtaattattttattaaatactttcatgggacaacactgaagatatgacactttgatacagtgTGAAGTAACAGTGTAAATATACTGCTCCTTCagaataactcaacacacacaaccattaatgtctaaaccccGACAACAAAACTGAGTGAAAATAGCCAAATTATGGCCAGTTTGCCTCTTTCCTTCCCTGGGCTCATGTAACTTGTTAGTGTTACAAGGTCTAAGTTGTACATGGGGCACACGTGTGTTAAATTTGGTGTGATcactttatttcacattttaatctgGACGCTAACTTAGGCTGTGcaattaactgtatttttaacgTTGCAATATTTGTTTGCAACAACAGAGGGAGATTGTAAGATTGTAATCATGTGACATAACTAGACTgaaggtagagcgaggtagaggttTATAGTGAACACACAAACCAGACTTCCTCATTCctaatgctgaaaaaaatcagatctaaaATTGATATCAAGAAATCTTAACGGTATTATCACACCACACATTTTTTCGATATTGTGCACCCCTATTGCCAACATGCTCAGAAACCTGTAATAACCCTGCGCACAACACTGTGCTCGTCAcgatttactgttttctttcctgAAAAAACACTTCCTCCTCTGTTGCACACATTCCAGCTTTATTTACAGGCATTTTTTTTCACACGGATGTGTACTGACTCAGCATCTAgccattgacttccattaatcTATGGCTTTTTTGTGggatttctcagtgttttcagtgAAACATGTTGATGTTATTGTCTGTGGGAATCAACTGTATATTACAAGTGCAATAGATAGAAGTTCCGTTGGTTGATAAACAAACTTTtgggtttatttgtttataataaaCCAGGAAGATCCAGTACTGGTGCAAACTTTAGTGAGACTAATGTCTCATATACTGGGTGTTAATGTTATCTTTAAGTTAGTCTATATGGGTTTTGCACtacatgtgcgtgtgtgtatgtgtgtgtttgtgtgtatattatttGACCACACTTGAACTGAAAACCTTATTTTTTCTTAGTAAAGTAACTTGATTTAAAATGCCTTGtaataagtataattattaaataattttttgggAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53702 lncRNA upstream 23743 1839503 ~ 1841649 (+) True G39825
XR_002649919.1 lncRNA upstream 58451 1803667 ~ 1806941 (+) True LOC111192496
XR_002649916.1 lncRNA upstream 137737 1727164 ~ 1727655 (+) True LOC111192493
TU53682 lncRNA upstream 143462 1719869 ~ 1721930 (+) True G39816
TU53546 lncRNA upstream 180927 1596420 ~ 1684465 (+) True G39718
TU53704 lncRNA downstream 39036 1910966 ~ 1952906 (+) True G39826
TU53749 lncRNA downstream 57020 1928950 ~ 1970208 (+) True G39846
TU53750 lncRNA downstream 59263 1931193 ~ 1932060 (+) True G39847
TU53751 lncRNA downstream 60216 1932146 ~ 1932812 (+) True G39848
TU53868 lncRNA downstream 150253 2022183 ~ 2022598 (+) True G39914
XM_022670138.1 mRNA upstream 29008 1809602 ~ 1836384 (+) True LOC103030943
XM_022670136.1 mRNA upstream 70460 1761227 ~ 1794932 (+) True muc2
XM_007260240.2 mRNA upstream 159394 1700837 ~ 1705998 (+) True rplp2
XM_007260235.3 mRNA upstream 420169 1440755 ~ 1445223 (+) True sdhaf2
XM_015608586.2 mRNA upstream 438275 1420391 ~ 1427117 (+) True polr2l
XM_022669489.1 mRNA downstream 10873 1882803 ~ 1948422 (+) False mapk8ip1
XM_007236233.3 mRNA downstream 26998 1898928 ~ 1948422 (+) True mapk8ip1
XM_022669490.1 mRNA downstream 246713 2118643 ~ 2235758 (+) True LOC111192498
XM_007238866.3 mRNA downstream 510123 2382053 ~ 2388088 (+) False LOC103031990
XM_015602896.2 mRNA downstream 510131 2382061 ~ 2388088 (+) True LOC103031990
TU53708 other upstream 78871 1783424 ~ 1786521 (+) False muc2
TU53709 other upstream 79156 1783424 ~ 1786236 (+) False muc2
TU53710 other upstream 80299 1781482 ~ 1785093 (+) False muc2
TU53705 other upstream 81048 1783424 ~ 1784344 (+) False muc2
TU53707 other upstream 82732 1779691 ~ 1782660 (+) False muc2
TU53987 other downstream 818037 2689967 ~ 2811496 (+) False LOC103029230
TU53995 other downstream 863666 2735596 ~ 2738217 (+) False LOC103029230
TU54378 other downstream 2262580 4134510 ~ 4135585 (+) True G40318
TU54660 other downstream 3436616 5308546 ~ 5310807 (+) False snrpa1
TU54910 other downstream 4661435 6533365 ~ 6533674 (+) True G40756

Expression Profile