RNA id: XM_015602438.2


Basic Information

Item Value
RNA id XM_015602438.2
length 1701
RNA type mRNA
GC content 0.48
exon number 11
gene id cers3
representative False

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 5722876 ~ 5750365 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAAGCCTGTACACGCGGTCGATAAGCTCAGAGAGCCGGCGACACACCTTGCAGCATTTCCTAGGATCCAGGCTGGACCTTCACTGACTCTTCGGCACGTTCGCTATTAATGAAAGCGGGTGCAGGGGGAGGAGCGCGGGCCAAATATTTACACTGGAAATAACTTGAAACTCTACAGGTGTAGGATTTGACAGAGTGGGCGGGATGATTAAGACCATTGGGGAATGGTTCTGGTGGGACCGCCTCTGGCTGCCTGTTAACCTGACATGGGCGGATCTGGAGGATAAGGATGGGAGGGTCTACGCCAAAGTGTCGGATTTGTACATCACCCTGCCTTACTCAATAGGCTTCCTTATAGTTCGATATGTGTTTGAAAGGTTTGTAGCCACAGCGCTAGCTGAATGCCTCGGTGTGAGAGGAAAGAGCAGGCAGAAAGCAGTAGAGTCCAATCCCATCCTTGAACAGTATTATATCTCACAGTCCAAAACCCCAGCAAAGGCAGATATTCAGGGCCTGTCCAAAAAATGCAGCTGGTCCAGCAGACAGGTGGAGCGCTGGTTCAGGAGGAGACGCAACCAGGAGCGCCCGGGGGTCCTGAAGAAGTTCAGAGAGGCCAGCTGGAGGTTTGTGTTCTACCTTGCAGCTTTCATCGGCGGCATTGTAGCTCTGTATGATAAACCGTGGTTTTATGATTTACGAGAAGTCTGGATGGCCTATCCGAAACAGTCCATGCTGGAGTCACAATACTGGTACTACATACTGGAGATGAGCTTTTACTGGTCCCTTCTTTTCAGCATCACGTTCGATGTCAAACGAAAGGACTTTAAAGAGCAAATCATTCACCACTTAGCCACACTGACCTTACTGGCGTTCTCCTGGTGTGGGAACTACATCCGTGTTGGGACTCTGGTCATGCTCGTCCACGATGCCTCTGATGTGCTTTTGGAGTCTGCCAAACTCTTCAACTACTCCAAATGGGAAAGAGCCTGCAACAGcagttttgttctgtttgctgTTGTGTTCATGGTGACGAGACTCGTTATCTTTCCATTCTGGATTATCCACTGCACATGGGTGTACCCCCCAGACTACTACCCTGTTTTCTTTGGGTATTACTTCTTCAATGCTGTGCTGGTTATTCTCTTGATGCTGCACGTCTTCTGGGCTTACCTGATACTCCGCATGGTGAAGAAGTTCCTCTTTGGCAGTTTAACCAAAGACGAAAGAAGTGacaatgaagaagaagaagatgatgaagaagaagaagaagaagaaaagtgtAGCATATCTGAGGAACATGCTGGATACGTAAAAGTGACCAACGGCTGTGGAGGACGAGGCACAGCAAACCGTCACTAACAGTGACAGAGAGAGTGCTTTCCCTTGTTTTCATGGTGGTGACTGAAGGACCTTAATTGATGAAGTTTGTGGACTCCCAAGGTGGACAGCAGCCAGGAAATGGCTTTTGAAGTGGACAATAAGACACGTGTGTGCCAGAGAACTGATcacaacacatttttacacattttacatacaAGTATCTTTCAACGAtgcaacaaaacacaaacaaatgacTCTTTCCGCTCGCTCAGTGCCAGTGTACCCTCGCGTCGGCTCCGTCAtgttggccatgctctctctgtgaCCTACAAACTGAGCAAGAACAGATTACCGAAGGGAAATAAAAGCTGTCAACCAGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54674 lncRNA upstream 269921 5445193 ~ 5458624 (+) True G40556
TU54663 lncRNA upstream 416201 5308546 ~ 5312344 (+) True snrpa1
TU54611 lncRNA upstream 565216 5158991 ~ 5163329 (+) False G40511
TU54612 lncRNA upstream 565216 5158991 ~ 5163329 (+) False G40511
TU54595 lncRNA upstream 574021 5147625 ~ 5154524 (+) True G40510
TU54802 lncRNA downstream 90189 5840554 ~ 5840773 (+) True G40660
TU54837 lncRNA downstream 314033 6064398 ~ 6064642 (+) True G40692
TU54840 lncRNA downstream 341506 6091871 ~ 6092282 (+) True G40695
TU54842 lncRNA downstream 343944 6094309 ~ 6129206 (+) True G40697
TU54854 lncRNA downstream 447594 6197959 ~ 6198236 (+) True G40709
XM_022669526.1 mRNA upstream 10610 5709700 ~ 5717935 (+) True lins1
XM_007260216.2 mRNA upstream 304232 5328228 ~ 5424313 (+) True chsy1
XM_022669523.1 mRNA upstream 408406 5312640 ~ 5320139 (+) True selenos
XM_022669521.1 mRNA upstream 417623 5305687 ~ 5310922 (+) False snrpa1
XM_007258133.3 mRNA upstream 721960 5001765 ~ 5006585 (+) True mex3b
XM_022670144.1 mRNA downstream 12286 5762651 ~ 5779274 (+) True adamts17
XM_022669529.1 mRNA downstream 64149 5814514 ~ 5835086 (+) False lims1
XM_022669528.1 mRNA downstream 64149 5814514 ~ 5833875 (+) False lims1
XM_022669530.1 mRNA downstream 64150 5814515 ~ 5836087 (+) True lims1
XM_007252577.2 mRNA downstream 1127407 6877772 ~ 7013787 (+) True pcdh17
TU54660 other upstream 417738 5308546 ~ 5310807 (+) False snrpa1
TU54378 other upstream 1592960 4134510 ~ 4135585 (+) True G40318
TU53987 other upstream 2917049 2689967 ~ 2811496 (+) False LOC103029230
TU53995 other upstream 2990328 2735596 ~ 2738217 (+) False LOC103029230
TU53709 other upstream 3942309 1783424 ~ 1786236 (+) False muc2
TU54910 other downstream 783000 6533365 ~ 6533674 (+) True G40756
XR_001518717.2 other downstream 2076158 7826523 ~ 7826914 (+) True LOC107197696
TU55733 other downstream 4245388 9995753 ~ 10005398 (+) False LOC103037553
trnar-ucg_1 other downstream 4541972 10292337 ~ 10292409 (+) True trnar-ucg_1
trnam-cau_21 other downstream 5004844 10755209 ~ 10755281 (+) True trnam-cau_21

Expression Profile