RNA id: XM_015602896.2


Basic Information

Item Value
RNA id XM_015602896.2
length 2534
RNA type mRNA
GC content 0.47
exon number 5
gene id LOC103031990
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 2382053 ~ 2388088 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCTATGGAGTCTCTGTGGCGGGTCCGGAATGGCGGGTTTTTCGTGAGGCGCCGCTTCAGTTTAGACTTTCTTCCACTTTAAACAGATTTAGGGATTAAACTCAGATTTTCGGCGCGCTAACAGGGATGGACCTGCGGGACCCGAGGAAACAGCCGGAGCGCCGCCGCTTCCAGAGAAAGTGAGATTTATTCgGTTAAGGTCTTAATTCTGAGAAAGTTAACATCCACCAACCTGTGTTCTCCTGTATCATGAGGAGGTCTGGGGCTTCAGTCCCACCTCGTCTCCGACGACAAAAACCTGATCAAAGCGACGTCAAAACTTCTCCCGAAAAAGATGTGAGAACTAAAACTAGCAGACGGATGAGGAAAGTGAAGGCGGGTCCACTGAGAAATAAATTCAATCCGGACTCGTTCTGCTCGGACAGTGAGGGTTCTGGAGTGAGTGATGGCGTGGACCGGGCCGTGACCTCGCCCGTACCTGTGCTTGTTGATCTCACTGGTGAACCTGAACGTCTGGTTGAGGTTGGTGGAGCTCAGAATCAGCAGGATGTTGTTCTGCTCTCGTCTGGTGAGGAGGGTCAGATCAGACGGTTGGAGTTGGTGAAGTTTGGGCGGAGCTCGGAGGATCCGGTGGGTAAAGTTGTCTTGCCGCCGCAGTCTCTGGCAGAAGACACACTGAAAACAATCCGACTGAAAAACGAAGCTTCAGGACGAAACCCGCTCTCTGATAGTATCGGTACGATTCTGATTGAGAGGTGGGACAGTCAGTCGGACGAGGCGAGCGCTGAGGGATCGGTGGTGTCAGGTCCCGGCTCCCCTCACAGTGTCCTAAGCTCACTGAGGTGCAGAGACTGCAGGACACTCTTCACCAAAATCAGGAGACAAAGACCTCCGAAAACTAGGAAACGGGACTATGATCCAGCCTCTTTATCATGTGATGAATGGCTGCTTATTAAGACTTGGCATCCAAAGCGACGGAGGCaagagagaggaaagttgtgGACGCATCTGAAGCGGATCAGAAAGCTGGTGCTGGAGCTTTCGGGTTGTGCCATGAAAAACACAGTCACCTGTTCTAGACCTCACGTCTTCCTGCAGAGGAATTTGCGTCGCTGCAGGAGAATGACCTCTGACAGCAAAGCCAAGCCACGACAGCGCCGCCGACCCAGGAAGAAAATCCTGTGGCCTCCTCTGGGTTCCAGAAGAAGAGTAAAGAGAAAAACGTTTGAAAGAGATGATTCCTTAGATCAGCTTTTCCCTTTAGACCTCACCGCCTCCAACAACGCCCGCCAGGACCAGCCTGCGAGCCGCGATGATCGCTCTGAACCACAAGAGCAGGAGAGAGTTCTTAAACACGTCGTCCGGGACTTTACCGGCGTTCCGGACCTACCGGAGGGAACACGCAGGGAACTGAGATTTGAGGATCTGCTCAGTGCCCTGCCTATAGAGTCACAGAAACCACAGCAGGGGATcctacagagaaacagaggaagaagaaaaaccAATACAAGTCAAACAGATCTCCCAGCAAATGAACTGGATTATTCCAGAGCCAAAAATCTGCTGTGTGGGGATTCAGACGAGTTCAGAACCCCTACAGATCTCTCCACTTTGGATTCGAAGGTTGTCAGAAAGAGTCACTCATCATCGTTCTTTTCGTCTGGAAACTCGTTCAGTGCGGAACAGCGGGGCAGCTTCAGGTCCATGTTAGCGGCGGTGGAGAAGAGTCACAACCGGATTATTAAAGAATCTCACAGTTGAGGCTCTCGCCCGGTTCTGGTTTTGGTTCTGTTTGTTTAAGGTTGTTGAGTTTCTCTGTTCTGTTTTAGGCTGGAGAAATATAGGCTGTTACCTACACGTTCACGTTTAAACGATAGGGGGCAGTGCAGCTCTCAGCAGCATCAAATACACATCAATCAAATACACAGGACGTTTAATGGAAGATTAAAAGCTGTAAGAACGGTATTGCCGCGCTGGTAAAGGGGCCGCATCTGTTATGTTTATGATGCAGCCGGTTGACTGCATTTATACGCAGCCAAACATCAAGTTTTTCTCCAGCTTTAGAGCTTAATAGTTAGAAACTGGCATCTAATTGGTGCACTCTCttagtgaaacatttaaaagccTGAAAAAAGATCTTCTGATCAAACAGTTTGCTGTTTGTTGTGATTTTGAATACCTACCTGTTCAGGTGATTAGACCTGGATAGTTGACAAATCGTTTTTCATATTTCCGGTCCTTTATTGTTATTgtatagtgttttatttttgtttttttgttagttaAATTATTAGCATAgacttaataacttaaaaagagGCCAAGAAGTAACCacactgctgtttttttgttctgttgctGAAACGTTCTCTCTTACTCAGGAGTAAATTTTCagagtaaataaatgtataaagtgTAATTAACATGTATGTAGTTCagttcctttttttctgtgttctgttttataattattaattataaatgtcTACAGTGGGATTGTTGCTGGTAACAAATAAACACGGCTTCTGTTGACTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53899 lncRNA upstream 4239 2377506 ~ 2377822 (+) True G39942
TU53885 lncRNA upstream 165398 2215968 ~ 2216663 (+) True G39930
TU53884 lncRNA upstream 177103 2204523 ~ 2204958 (+) True G39929
TU53883 lncRNA upstream 250126 2130974 ~ 2131935 (+) True G39928
TU53881 lncRNA upstream 250543 2129265 ~ 2131518 (+) True G39927
TU53904 lncRNA downstream 950 2389038 ~ 2390639 (+) True G39945
TU53905 lncRNA downstream 950 2389038 ~ 2389322 (+) False G39945
TU53906 lncRNA downstream 1828 2389916 ~ 2391562 (+) True G39946
TU53913 lncRNA downstream 26684 2414772 ~ 2419056 (+) True G39952
TU53902 lncRNA downstream 31062 2419150 ~ 2425105 (+) True G39943
XM_022669490.1 mRNA upstream 146303 2118643 ~ 2235758 (+) True LOC111192498
XM_022669489.1 mRNA upstream 433639 1882803 ~ 1948422 (+) False mapk8ip1
XM_007236233.3 mRNA upstream 433639 1898928 ~ 1948422 (+) True mapk8ip1
XM_007236235.3 mRNA upstream 510131 1865392 ~ 1871930 (+) False slc35c1
XM_007238867.3 mRNA downstream 4027 2392115 ~ 2406388 (+) True LOC103032316
XM_022670140.1 mRNA downstream 209604 2597692 ~ 2738656 (+) True LOC103029230
XM_007237229.3 mRNA downstream 412930 2801018 ~ 2861383 (+) True kiaa1024
XM_022669496.1 mRNA downstream 598277 2986365 ~ 3006325 (+) True zfand6
XM_022669497.1 mRNA downstream 598278 2986366 ~ 3006325 (+) False zfand6
TU53708 other upstream 595540 1783424 ~ 1786521 (+) False muc2
TU53709 other upstream 595825 1783424 ~ 1786236 (+) False muc2
TU53710 other upstream 596968 1781482 ~ 1785093 (+) False muc2
TU53705 other upstream 597717 1783424 ~ 1784344 (+) False muc2
TU53707 other upstream 599401 1779691 ~ 1782660 (+) False muc2
TU53987 other downstream 301879 2689967 ~ 2811496 (+) False LOC103029230
TU53995 other downstream 347508 2735596 ~ 2738217 (+) False LOC103029230
TU54378 other downstream 1746422 4134510 ~ 4135585 (+) True G40318
TU54660 other downstream 2920458 5308546 ~ 5310807 (+) False snrpa1
TU54910 other downstream 4145277 6533365 ~ 6533674 (+) True G40756

Expression Profile