RNA id: XM_007238867.3


Basic Information

Item Value
RNA id XM_007238867.3
length 3336
RNA type mRNA
GC content 0.48
exon number 3
gene id LOC103032316
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 2392115 ~ 2406388 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCACCGCGGCGCTGCAGAACCGGGACTCGAGCGCGCGGGAGGCGCGTCAACTTCAATACAGCGCGATTATAAATATCtgcatttacagttttatttatattttgtatttatatttatatttgtatatatttatatatataggtatatgtatATAAGAGTAGGAGGCGCGCGCTGCCGGACGCGGAGCGCGGTGGGAGCAGGTCTCGCCCCCGGCGGGTGGATGGAGTGCGTTTGAACGCGGCGTTTCTGACTCCGCGCGCTCGTACGGAGGAGCACCGTCTAGTGCAGGAGGACCGGGAGTGCCGGAGTTGCGCGCGAAGGAGGATGCGCCCGGGTTTGGCACGAGCATGCACGCGGGGACAACTCTGCAGCTGAACTTGGACTGACTGAGCGCAGACTGGGCGAGTCCAACTGAACAGAACCAGAGATGCCCAGACCTCTCtctgccctgctgctgctgctctgcctGCATGCGGTTACATGGGGCGTGGAGCCCGGCACGACAGCAGGTCCTCAGGGATGGCGAGAGAGCGATAAGGACGAGAGCTTCTCCACGCAGGATCTTCGCTCAGCCCTCCTCAAACCCCTGCGGCTCTTCGCCCGCCCCTCGCCACCCGTCACCGTCCGGAGGAACGAAGCCCCTCAGCCTGGAGCCGTTCAGGACCCGTGGACCTGGCTGTCCAACCGCACCGATAATGAAGAGACTCTGGCCAGAGCCAAACGCCGACCCATCGTAAAGACAGGAAAGTTCAAGAAGATGTTCGGCTGGGGCGATTTCCACTCCACCATCAAAACCATCAAGCTGAACCTGCTGATCACGGGGAAGATAGTGGACCACGGGAACGGGACCTTCAGCGTCTACTTCCGACACAACTCCACGGGCCTGGGGAACGTGTCCGTGAGCCTGGTGCCACCGTCCAAGGTGGTCGACTTCGAGATCATCCAGCAGGAGACTGTGGACATTTCCAAGGACGGTAAAGCCTTTAACTGCAGGGTGGAGTACGAGAAGACGGACCGCAGCAAGAGGACGTCCCTGTGCAGCCACGACTCGGCCCGGGTCTGCTTCCAGGAGCAGACTCAGAGCCATGTCTCCTGGCTCTGCTCCAAGCCATTTAAAGTCATCTGCATCTACATAGACTTCTTCAGCGCCGACTACAAGCTGGTCCAGAAGGTCTGTCCGGACTACAACTACCACAGCGACACGCCCTACACCTCCATGGGATAGTGGTCTGCTGAGGAGCTGAGGTCCTCACTGACCACCTGCCCTCCTAACCTTTTACTACAAACAGAACGTAAACTAGCAAACTCTGAAAAGAGTCCTGAATaaatgctgctgatgcagcggGACAACGGACAGGACGATGGACGGGACGACGGACGGGGCGGCGGACGGCGCGATGGACAGGGCCAGTGCTCAGGCCCTGCTGAAGACTCGGGAATACGTTCTTGTACAGAAATTGTAAAAGCCCATCATTGTCGTTGTTCCACTCGTGATGTTTGTAGTTCTGCATGTTCTAACAGTTCTAAAAACGTTATCATAACATTTGTAAATCCGTAAATCTGCAAAcagtagggatgcactgataTGGGAACTGTGGACTGATGCTGGCTCAATATcaacaatattttgtgtggaaaTGATCTGatctgtaaacatatttaaaatattgacacttGGACTAAATCTACTTGAATGATATCAACACAGAACTACAGTACACTGATCAGCCAAAATATTAAAACCACCTTAAAACTGTTAGGCAGCGAGGAAACAGTCTTAGAGTGCTTAGAGTACTCTGATCAGGCCAAACTCAAATCGCTACACAACTGTGACAGAACGTAGAACTGAATTAAATTGAGTTGAAGTGAGTTGTTCCTCGTATTCCGTGGTCACGGTCGAGTCACATTTGGATGTGCGCAGTGGAGAttccacctcacaacttaaGATCTCAACACACTTCTTTTTGGGACGATGTTTGATTAACTTCGGTGAATAATATGACGTAATTGTGGGAAAAAGTGAACAGTGCAGACGTTTCTCAGGAGCTTTACTCACCTTGTTTCGCACGTGGAAGCTGAGGGATCTCCGTGGACGAAGGCACTTCACAACAACACCTGTGATTGGCTGGAAATGCATGTCTGGCATTGTGCAACGCTcgtttaattatttaaagcatCTGCTGTAACTTTACTATTGGTGCACCTCCAGAGGTCTTGTAGGGTTCTGGTCTCGACGGGTCGGAGCACCTACTCGGGATTAGGCaggtgttttaatgttatggctgattaggAAGCTGCAATAAATGTCTGTAAAGTTACCCTGTGTTCAGAGTGGTGATGAGGTAACAGTTCGCTGGTCACCCCGAGTTTATCTCCTGTGGGTTTAAGTTCTCTCAGGCCCGTGCATGAGAACGACGTGTATCGGCGTGGGCCGTTAGCACGCTGGCTAATCTAGTGAGCTATCTATTGAGAAACCAACCCGCCAGAGAGGCTACCCAAAACCCACTACTGTCTTTCCtgctacattttttttgtgtgaattgTTCCTGTTTATgtgtaaaaagataaaaaatcctCTCTTCCACTGCTGAGAACAGGAACCAGAATCTGGATACCTCAGAACTCAAcgtctgtgattggtccaaagaattTGCTCAGCCATCTAATCTGTTTGCTTTGGGCCAGGTCAGCTGTCGATCTGTCTCctgccagtgtgaacacagggttAGAAATACCAATACGGAACTAaggctgtgtaaaaaaaataaaaaaataattcaatacaATTAGCCTATTTTGGACAAAAGCGATgccttaatattaaaatataaaaattactgTAACTGCTTTGGATTAATTCAGATTAATGTAAACACTAAGTGGTTAGTTATTGTATCTAAAATATCCCTAAACAAATCGATGCTGAAGAAAAGTGGAAACTGAATTCTGAATTGAATCATGTGTCCAAAACCATTTCTCACCAAAAGTATCCCAATATCTTTGTGCATCCCTGTTAAATTAAGGTGGAGTTTCATCAGTGACCTGTTCACACTGACCCCAGTgatgttgtaaatgtaaatgtaatgtttaaagtGAATCCAAACTTCACCATAACTGTATCAGAACTCTGTTCCTGACGGATGTTTAAAGACGGATTCCTTATCTGTTCTTGTCCTCCGAGAAGCTTCCTTTCATGCCTTGTTGATGTTTTCATGTTTATGAGATCTGTGAGTCAGTGATGAGTTTTAAAGTCGTAACGCGTCTCCCGGATTCACTCTGTACCACTGTTTTcatcattaaacaaaataactcacgataaaaaacactgaggaATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53906 lncRNA upstream 553 2389916 ~ 2391562 (+) True G39946
TU53904 lncRNA upstream 1476 2389038 ~ 2390639 (+) True G39945
TU53905 lncRNA upstream 2793 2389038 ~ 2389322 (+) False G39945
TU53899 lncRNA upstream 14293 2377506 ~ 2377822 (+) True G39942
TU53885 lncRNA upstream 175452 2215968 ~ 2216663 (+) True G39930
TU53913 lncRNA downstream 8384 2414772 ~ 2419056 (+) True G39952
TU53902 lncRNA downstream 12762 2419150 ~ 2425105 (+) True G39943
TU53934 lncRNA downstream 92481 2498869 ~ 2499291 (+) True G39965
TU53999 lncRNA downstream 386146 2792534 ~ 2793711 (+) False LOC111192560
XR_002650014.1 lncRNA downstream 386152 2792540 ~ 2793815 (+) True LOC111192560
XM_007238866.3 mRNA upstream 4027 2382053 ~ 2388088 (+) False LOC103031990
XM_015602896.2 mRNA upstream 4027 2382061 ~ 2388088 (+) True LOC103031990
XM_022669490.1 mRNA upstream 156357 2118643 ~ 2235758 (+) True LOC111192498
XM_022669489.1 mRNA upstream 443693 1882803 ~ 1948422 (+) False mapk8ip1
XM_007236233.3 mRNA upstream 443693 1898928 ~ 1948422 (+) True mapk8ip1
XM_022670140.1 mRNA downstream 191304 2597692 ~ 2738656 (+) True LOC103029230
XM_007237229.3 mRNA downstream 394630 2801018 ~ 2861383 (+) True kiaa1024
XM_022669496.1 mRNA downstream 579977 2986365 ~ 3006325 (+) True zfand6
XM_022669497.1 mRNA downstream 579978 2986366 ~ 3006325 (+) False zfand6
XM_015608092.2 mRNA downstream 579980 2986368 ~ 3006325 (+) False zfand6
TU53708 other upstream 605594 1783424 ~ 1786521 (+) False muc2
TU53709 other upstream 605879 1783424 ~ 1786236 (+) False muc2
TU53710 other upstream 607022 1781482 ~ 1785093 (+) False muc2
TU53705 other upstream 607771 1783424 ~ 1784344 (+) False muc2
TU53707 other upstream 609455 1779691 ~ 1782660 (+) False muc2
TU53987 other downstream 283579 2689967 ~ 2811496 (+) False LOC103029230
TU53995 other downstream 329208 2735596 ~ 2738217 (+) False LOC103029230
TU54378 other downstream 1728122 4134510 ~ 4135585 (+) True G40318
TU54660 other downstream 2902158 5308546 ~ 5310807 (+) False snrpa1
TU54910 other downstream 4126977 6533365 ~ 6533674 (+) True G40756

Expression Profile