RNA id: XM_007239785.3


Basic Information

Item Value
RNA id XM_007239785.3
length 2403
RNA type mRNA
GC content 0.45
exon number 11
gene id LOC103036425
representative False

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 618157 ~ 637895 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cctctcagtctctctctctacagtgtGTGGATGTTTGTGTCGTTTTTGCTCCTCCGATGCCGCAAAAGGAGTTCCATAATCAGACCTCATGGGAAACCGGAGTGGCCTCTATAATGCAAAACAGTCACAGTGGGGTAAATCAGCTGGGTGGTGTGTTTGTAAACGGTCGGCCGCTGCCGGACACGACAAGGCAGAAGATTGTAGAGCTTGCTCACAGTGGAGCTCGACCCTGCGACATCTCCCGCATACtgcaggtgtcGAACGGCTGTGTGAGTAAAATCCTGGGCAGGTATTATGAAACCGGTTCTATTCGTCCGCGAGCGATTGGGGGCAGTAAACCGCGGGTAGCGACTCCTGAAGTGGTCGGTAAAATCGCCCAGTATAAACACGAGTGTCCGTCCATCTTCGCCTGGGAGATCAGGGACAGGCTGCTCAGCGAGGGAATCTGCTCCAATGACAACATCCCCAGCGTTTCCTCCATAAACCGAGTTCTGCGTAACCTGGCCAGTGAGAAGCAGCAGGTGGGGGTGGATGGTGTGTATGATAAGCTGAGGATGTTGAACGGTCAAATTGGCACATGGGGGGCACGGCCTGGGTGGTACCCTGGAACTGCAGCACCTGGTCATCCAAACCAAGATGGTTGCCAGCAGCAGGAGaacagtagtgaaaacacaaatTCCATCAGCTCCAATGGAGAGGACTTGGACGAAACCCAGATACGGCTGCAGCTGAAAagaaaattacaaagaaatCGCACATCTTTCACTCAGGAACAGATTGAAGCCCTGGAAAAAGAGTTTGAAAGAACTCACTATCCTGACGTGTTTGCAAGAGAAAGACTTGCAGCCAAAATCGATCTCCCAGAGGCAAGAATACAGGTTTGGTTCTCCAACAGAAGAGCCAAATGGAGGAGAGAAGAAAAGCTGAGGAATCAGAGGCGACAAGTCAGCAGCAACTCCAGTCATGTTCCAGTCAGCAGCAACTTCAGCACCAGCATTTACCAGCACATTCCCCAGCCCAGCACTCCTGTAACTTTTACATCAGGCTCTATGCTGGCCAGGTCGGACGGCGCTTTGACGAACTCTTATAGTGGCCTGCCGCCCATGCCCACCTTCACCATGGCTAATAACCTCCCTATGCAGCCTAGCCAGGCCTCCTACTCCTGCATGCTGCCCACCAGTACGCCAGTGAATGGGCGGAGCTACGACACATTTCCATCCCCTCATATGCAGGCACACATGAACAGCCAATCAATGTCAACCTCTGGTACCACCTCTACAGgACTCATTTCCCCTGGAGTTTCAGTCCCGGTGCAGATCCCCGGAGCAGAGTCGGATATTTCTCAGTTCTGGTCACGACTgcagtaaagaaaaacactactTTACCCTCTGACCTACCAGCagtatttaacacacacacagatgagcAGAAGAAATGAGTGTTTCTTCAgtgctgtgttgtgttctgTGGAATAAAtggaggaaaaaggaaaaaagtgcCACATGGTAAAATTctagaacaaaacaaaaggaaagttttctgtctttattacgtttgtgtttaaaaactctgaGAAAGTTGTGCAGGAGGACGAGGACGGCAGGGCTGGACACACAGAGACTCTGCTGGCCTTTATTTCAAAAAGAAAACTTTGCCCTCACTGTGCGATGCTGTGCTCTGGATTCTCTGCTCACCAGCAACCAGTTTATTCCAGACTGACCCACATCAGGATCATATCAAACCAACACTGTCCGAAAGACCCACCTGCAGCCGTGTGGACTGGAGCTATAGAGAGTTAAAGCTGTGCTCTTCTCGACCAGAATGAATGTATCTTTAAACCAAAGGAGCAGCAATGTTTTGGCAGAAATGCTCACAGACTTTAATTCAGTTTATGTGATGTTTGGGTTTAAGTTCATATTgtccagaatatttttttaaataaaacttctgttttatctgattttacccaataataattaatatacaaaTTATGCATATTTCAGCTCCCTTTCTTCAGGGTGGGATGCTGTTGTCATAGCCATTGCTGTTATATTCTGTCCTACAATCACTTCATTTGTGATCCATTAGCAATATTTATCCacaaattgataaaaataagATGCATAGTTATAGAACATATCAGAACTGAATTGCTGATCGTTAAAAAAGACCAAAGCCTTTTTAtatctacttttcttttttccttgtTCGTGAAGTTTTGTTTAAGACTGTCACTTCCCTGCTTGTTGACTGACCACACTAATCAGCTTTTATTTATGAGAAGtgtgcttaatttaatttaatttgagtGTATATCTGTAAAGAAATAATTCAATCTATCtaattgtatttaaacattttgttaaCTGATTTTATGAAAGCTATAAAAATCATTTTCACTTC

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0002089 lens morphogenesis in camera-type eye biological_process
GO:0090104 pancreatic epsilon cell differentiation biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0030900 forebrain development biological_process
GO:0030902 hindbrain development biological_process
GO:0003309 type B pancreatic cell differentiation biological_process
GO:0003310 pancreatic A cell differentiation biological_process
GO:0003311 pancreatic D cell differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002649914.1 lncRNA upstream 14231 601856 ~ 603927 (+) True LOC111192489
TU53159 lncRNA upstream 70345 547609 ~ 547813 (+) True G39459
TU53157 lncRNA upstream 70806 547081 ~ 547352 (+) True G39457
TU53152 lncRNA upstream 78330 539498 ~ 539828 (+) True G39452
TU53054 lncRNA upstream 79826 537284 ~ 538332 (+) False G39372
TU53215 lncRNA downstream 74938 712833 ~ 715218 (+) True G39504
TU53217 lncRNA downstream 107673 745568 ~ 749938 (+) True G39506
TU53218 lncRNA downstream 107673 745568 ~ 750620 (+) False G39506
TU53223 lncRNA downstream 112927 750822 ~ 753837 (+) True G39511
TU53225 lncRNA downstream 129443 767338 ~ 767614 (+) True G39512
XM_022669471.1 mRNA upstream 84531 479272 ~ 533627 (+) True cp
XM_007234270.3 mRNA upstream 146954 461480 ~ 471204 (+) True LOC103032607
XM_022669469.1 mRNA upstream 170843 417368 ~ 447315 (+) True LOC103032290
XM_015601581.2 mRNA upstream 170843 417385 ~ 447315 (+) False LOC103032290
XM_022669467.1 mRNA upstream 239659 297269 ~ 378499 (+) False wwtr1
XM_007239783.3 mRNA downstream 33986 671881 ~ 681622 (+) False immp1l
XM_007239784.2 mRNA downstream 34178 672073 ~ 681622 (+) False immp1l
XM_022669474.1 mRNA downstream 37854 675749 ~ 681622 (+) True immp1l
XM_007260221.3 mRNA downstream 284862 922757 ~ 963284 (+) True plekho2
XM_022669475.1 mRNA downstream 337042 974937 ~ 1000284 (+) True ankdd1a
XR_002649913.1 other upstream 327136 281585 ~ 291022 (+) False commd2
XR_455709.3 other downstream 284862 922757 ~ 963284 (+) False plekho2
TU53369 other downstream 568892 1206787 ~ 1209096 (+) True G39619
TU53383 other downstream 581911 1219806 ~ 1220486 (+) True G39626
TU53498 other downstream 772551 1410446 ~ 1413799 (+) False LOC111192494
TU53707 other downstream 1141796 1779691 ~ 1782660 (+) False muc2

Expression Profile