RNA id: XM_007240101.3



Basic Information


Item Value
RNA id XM_007240101.3
length 2211
RNA type mRNA
GC content 0.45
exon number 11
gene id trmt13
representative True

Chromosome Information


Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 13666402 ~ 13673565 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


CGCAGTGTGTCAGCATGGCTGAAGCGCTGTGTGACGGTGTGGCAGCTCCTCTACCTGGAAGATGCGCTTTTTACGTTATAAAGAAGAAGCGTTACTGTAAAATGGTGATCGGACGTGGAAAGTCGTTTTGTGGGGAACACGCAGATGCAgacaaagacagtgagagaaaaaggATCCCCTGCCCTCTGGACCCCAAACACACTGTTTTTGAAGACAGTTTAGCAAAACACCTGAAAAAGTGCAACTCGAAAGAGAAGCCCAAGCCTGTTTATTATGTGAAGGACATCAATGCAGGATCTGTAAATGAAGAGGAGGATGTCATCAGTGAGGTGTCTATTGCTGAACGAACCAAAGAGGAGCTGGATGATCTTATAGGGAAACTGAAGACTGCATTAAAAGGATTAAACATCAAACCTGACAGCAGCATTCTCTCTCATCCCGCGCTCCATGAAGCTCTCAATGATCCAAAGAATGGCAACTTTGCTTTCAAACACCTCAAGCAGCAGGCCTCAATCCTGGGGAACATGGAGGCCTTGGAGCTGCTTGGTCCTGGCAGGTGTTATGTGGAGTTTGGTGCTGGTAAAGGGAAGCTTTCCCACTGGATTCATGTGGCCATTGAGCAAGCTAAGGATATCCACTTTCTACTGGTGGAAAGGTCCAGCACTCGATTTAAGGTAGATGGcaagcacaaaaacacagatgcaATATTTGACAGGCTGCAGGTTGACATTCAGCACCTTGACTTACGAAAAGTGCCATTTTTAAGAGAAAAGGGACTTCCTGTCATCGCAGTGGGTAAACACCTGTGTGGCGCAGCGACAGATCTGACTCTGAGATGTTTATTTGAGCACAATCTCAAAGACCAAGACTGTGATCCACCCACCAAACGTGTGAAGCTCAATGAGGGATCTGAGGAGGACACCAAACCTGGAGAAGAACTTAAAGTCTCGGGGGTTGCCATTGCAGTCTGCTGTCATCACCGCTGTGACTGGAGGCACTATGTGGGAAAACAGTTCTTTAGGGAACGAGGTCTTGGAGTTCGAGAGTTTGACGCCTTCCAGCGCATGTCCAGCTGGGCTACCTGTGGCATGAGTAGGGTAGGCCAAGGTCACAAGAATTTGAAGCAAGAAGAAGTCAGGAGGACAgatgaaaaacaacaaaaagaagaagatgtggaagaggaggaggatgaggcaGAACATGAAGGCAGTTCTGAAACCATACCAGATAACCTTAACAGCGCTGTATCAGCAGAAGAGCGGGAGCAGATTGGACGCCTCTGCAAGACGCTGATTGACCAGGGCAGGCTGCATTACCTCCAGCAGCGAGGGTTTAAGTCCAATCTTAGTTATTACACCAGCCGAGACGTGTCTTTGGAGAATGTTCTTCTGACTGCTGTTCCTATCTAAAAACATTAAGCCTAAAACTGGACATGGACAGTGCTGTACATACAgtactttttaattgtttaattctaATTGAGTCTTTTGACAAGCAATCAGATGAGGTTTTGATTTCCTCCACTTTCACTTTTCTATCTTAAGTTTCTTCTTTGCCATAAACAAGACACAGATAGCTGTAAGGCTATGGCGCCCTCTAGTGTTGTGACTGCAAAGGTAGAATGCAGAACAGTCTTTACAGGATGAGCAGAACAAGCAAGACAGGACTGGACGTGACAGGACAGGACCAGACAGGACAGGTCTGGCCTCTTTGGACGGAAGACAGCAGAGCAGACAGTGGCATGCAGGACATCACAGCTATGGAGCAGCAATCTCTACCACACCTTCCAGTGCCACATTCAGCACAGAGGTATAAGTCTGGGAATCTGAAAcacagtatagattataaattAGATTGAAAGCAGATCATTCTCAGGcttaaatacaattattttattgttttttacatttatttttaaatatatatattttatataaaaacattgcTATAGTTTGTGCACACAGTGCATGTTGAGTACAGCGTAACCTCTTTTGCGAGCCTCATGGATGTAGTAATTCATGAACTCTCGGCCAAACATTTCCCTGtcatcttcttcctcctccacgtCCTCTTTCACGTCCGGCAGGGTCACGTGATATGTCAGCGGATTGTCTCGGAAATTTACAAACCTGCCAAAAATCAAAGCGTCAAATTTTGTAGAATCGTTTGTGAAGGattttgttttcattaataaaatctgattttatttta

Function


GO: NA

KEGG:

id description
K15446 TRM13, CCDC76; tRNA:m4X modification enzyme

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TU56848 lncRNA upstream 130376 13530352 ~ 13536026 (+) True G42220
TU56835 lncRNA upstream 148721 13509024 ~ 13517681 (+) False LOC103032215
TU56836 lncRNA upstream 148721 13509061 ~ 13517681 (+) False LOC103032215
TU56828 lncRNA upstream 190566 13472627 ~ 13475836 (+) True G42209
TU56814 lncRNA upstream 294597 13369304 ~ 13371805 (+) True G42195
TU57055 lncRNA downstream 162607 13836172 ~ 13857361 (+) False LOC103037142
TU57058 lncRNA downstream 163304 13836869 ~ 13838554 (+) False LOC103037142
TU57070 lncRNA downstream 325355 13998920 ~ 14002697 (+) True G42389
TU57067 lncRNA downstream 348078 14021643 ~ 14025396 (+) True G42386
TU57143 lncRNA downstream 383033 14056598 ~ 14073336 (+) True G42442
XM_015603321.2 mRNA upstream 44360 13617083 ~ 13622042 (+) True LOC103034435
XM_022669630.1 mRNA upstream 44360 13617083 ~ 13622042 (+) False LOC103034435
XM_007240097.3 mRNA upstream 53990 13592628 ~ 13612412 (+) True LOC103034113
XM_022669628.1 mRNA upstream 75985 13562232 ~ 13590417 (+) True LOC103024927
XM_022669629.1 mRNA upstream 75985 13566021 ~ 13590417 (+) False LOC103024927
XM_007240102.3 mRNA downstream 21291 13694856 ~ 13700883 (+) True rtca
XM_022669633.1 mRNA downstream 36481 13710046 ~ 13793719 (+) True cdc14a
XM_022669639.1 mRNA downstream 36481 13710046 ~ 13793719 (+) False cdc14a
XM_022669634.1 mRNA downstream 36481 13710046 ~ 13793719 (+) False cdc14a
XM_022669636.1 mRNA downstream 36481 13710046 ~ 13793719 (+) False cdc14a
XR_002649939.1 other upstream 44360 13617083 ~ 13622042 (+) False LOC103034435
TU56827 other upstream 215925 13448592 ~ 13450477 (+) True G42208
TU56657 other upstream 951374 12705559 ~ 12715028 (+) True G42096
TU56588 other upstream 1032973 12632816 ~ 12633429 (+) True G42068
TU56432 other upstream 1325489 12336542 ~ 12340913 (+) False LOC103047294
TU57395 other downstream 1221497 14895062 ~ 14899248 (+) True G42605
TU57948 other downstream 2305004 15978569 ~ 15983525 (+) False LOC103036127
XR_002649941.1 other downstream 2305865 15979430 ~ 15984632 (+) True LOC103036127
TU58501 other downstream 3519973 17193538 ~ 17196116 (+) True G43360
TU58763 other downstream 4338608 18012173 ~ 18014499 (+) True G43537

Expression Profile


XM_007240101.3 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 125.
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XM_007240101.3 Expression in each Bioproject

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XM_007240101.3 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 1500.
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