RNA id: XM_015603327.2


Basic Information

Item Value
RNA id XM_015603327.2
length 2461
RNA type mRNA
GC content 0.43
exon number 8
gene id bsg
representative False

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 14462650 ~ 14480454 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGTTCTCGTGCACGTCAGGATCAAATAGAGGACGCCGGAGCTGCGCCTCAGTCCGAGCCGAGCTTTTAACGGAGCGGATCAGGAGTCTAAACCTCGGTGAAGTGCTGTCAGTGATAAAcccacagagagacagagatgatGCGGCTGCTGGTGCTCAgcgggctgctgctgctctgtgtgGACCAGGCGTTTCTGCGGACAGAGGCTCAGATTGTACCTACACCAGCTGAAGTAGTCAACCAGACTTCAGCTACACTTAGCTGCAACCTCACCAACCCATCGTCTCCTATCAAGGGACACTACTGGACAAGGAATGGCAAGGTGATCGAGGAATCAAAGATGGAGATTCCAAGCCTCTACACAGAGCACACCATTAATAAAATTGATTACCATGTTTCCGGAAAGTATACCTGCGTCTTCATGTCTGAGCCAGAAGCTAAGCATGACATTGAAGTCATGGTTCCTCCCCACGTTTCGCCCTACAAGCAATCTGAGAACAGTAATGAGAAGGATAAAGCTGCTCTGGTGTGTGTGAATCATGGCTACCCTTACATCAAAGACTGGGAATGGTACAAGCTTGAGGAGTCCAACGGGAGGAGGCTGATTGTTTCTGGTGTCAATGGCACTGGAAAGTATGTAGTCAAGAACACGGATCACAATTCCACACTTACCATCGATGACCTTGACATCAATGGTGACATGGGTACCTATGAGTGTCTTGGAAAGAACGACCTTGGTGAAAATTCGGGCAAGGTCAACTTGCGTGTGCGCAGTCGCCTGGCAGCCCTCTGGCCCTTCCTTGGCATTGTTGCTGAGGTCATCATCCTTGTCACCATCATCTTCATCTACGAGAAGAGGAGAAAGCCTGATGAGATTAACGACGATGATGACTCAGGATCCGCCCCACTGAAGAGCAATTCTGCTACAAACCACAAAGACAAGAATGTCAGGCAAAGGAACTCCAACTGAGAGGGCAGCAGGTGTCCAGATGACTACTGATAAAGATGAGAAAAGCGCAACATCACTGAAGAGCACGTTCTTCAGTGCACctgcagtttctgaataatcttcttctacttcttcttctttgctTGAGTGTAAATGTGTTGAGATATTGATTGGTCTCTTCTTTTCCCAgtatttctctctgtgtgttataGGGGTTgtagggagggaggggggagaAATTGCATGATTGTGTTCTTGCTGTAGAAGTGTGTTTTTAGTGAAACCCTTTCAATGTGGGAATTAACAATTGGTGATTTCTTTCGTGTTGGCTTCCTCCACTGTACCCCAGAACCCACGCTACCAAACTGTTTGTGTGGTCTCAGCCGCGTCCAGCTCTCTGATAGTCGATAAAATCGGGAGAGTGGGCGGTTCTTTTGGGATGGTGTGGATATTAAGTTGAGTTTCAGCATTTCACATTTACCTTCATCAGAACTGTCTGGATGCATGTTAAACCCTGAAGAACGGTTTGGTACTGTGGGTTCGGCATCTTTTCTAAGACATTTGAAAAACATCTATAATATATTCACTTTTTGGCAGCATGGGATTTTCAGATGTTCAGATAATCTTGATGTATTAGCTGCAGTGAGcagttactattattattgattgattactaatttttcaggctgtttttttAGTAGTCAGACGACTCCTAATGTCATTAGTTCACATGACCATCTCacgtgatctttttttttttttcctgtaagccttaatgttaatattcaccGTTTTTGCTTAAGTTGTTATAGTTGTAGAGacactaaattaataattatctaTAAATGcagtgcagacacacacacaaacacccatacacacacacaccatgccaATTTTGCAGCATATTGCACTGTTCAAATTAGGACTGCCTATTGTTtaccatgttcattttattttttattgttctgtttttttttttgttttttgtttttttggtttttgtcAGACATGCTGAAGTCTAGTCGTCCTGTAAGTCGTCCAGTGCAGTCTAAGACTAGACTCAGACTGTAAGTGAACAACCCGTCGTAACTCTTCTGGTGAAAggctttttaaggtttttagcATCATTTTAAGAATCCATTTTTGAGGACCAATATAAAGTGTGTGCCACATGCCATTTGATACCAACTCCAAACCTTTCCAGTACTGAATAGAGAACCTTCTGATGATCTGTATCTTGATTACGGAGTACAGGTAACATTTTTAGTGGAAGTTTTTGTCCTGTGTATTCAATTCTCTTGTAAGCAGTTCAGAAGCCATACTCTCTCCAGTCTGGGTTAGTGATGTGACTGAATGTGTGCCATTTCTCTGTTAGGGGCATGTTGAATATTAACAACCTGTTAGAACTGTATAAAGTAATTTGCCTCGGCAGCGTTGGACATCTGAACTGCTGTCGACTGTACTGACCCGCACACTATTAATAAAGTTATTGGGTTTGATTTTAACTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57259 lncRNA upstream 48904 14412289 ~ 14413746 (+) True G42521
TU57265 lncRNA upstream 84620 14377478 ~ 14378030 (+) True G42527
TU57219 lncRNA upstream 155709 14303418 ~ 14306941 (+) False G42496
TU57216 lncRNA upstream 156563 14303541 ~ 14306087 (+) True G42496
TU57189 lncRNA upstream 301939 14160405 ~ 14160711 (+) True G42469
XR_002650009.1 lncRNA downstream 57867 14538321 ~ 14560369 (+) False LOC111192557
XR_002650010.1 lncRNA downstream 57867 14538321 ~ 14560369 (+) False LOC111192557
XR_002650013.1 lncRNA downstream 57867 14538321 ~ 14560369 (+) False LOC111192557
XR_002650008.1 lncRNA downstream 57867 14538321 ~ 14557757 (+) False LOC111192557
XR_002650011.1 lncRNA downstream 57867 14538321 ~ 14557757 (+) False LOC111192557
XM_022669651.1 mRNA upstream 50615 14359209 ~ 14412035 (+) True LOC103041829
XM_015603341.2 mRNA upstream 50615 14363154 ~ 14412035 (+) False LOC103041829
XM_007240122.3 mRNA upstream 117470 14334095 ~ 14345180 (+) True LOC103042131
XM_007240123.3 mRNA upstream 117470 14334095 ~ 14345180 (+) False LOC103042131
XM_007240124.3 mRNA upstream 117470 14334096 ~ 14345180 (+) False LOC103042131
XM_007240131.3 mRNA downstream 3487 14483941 ~ 14534170 (+) True LOC103044493
XM_007240250.3 mRNA downstream 141724 14622178 ~ 14660025 (+) True LOC103026177
XM_015603319.2 mRNA downstream 230920 14711374 ~ 14724638 (+) False LOC103026778
XM_022669680.1 mRNA downstream 230920 14711374 ~ 14724603 (+) False LOC103026778
XM_022669679.1 mRNA downstream 230921 14711375 ~ 14725957 (+) True LOC103026778
XR_002649939.1 other upstream 840608 13617083 ~ 13622042 (+) False LOC103034435
TU56827 other upstream 1012173 13448592 ~ 13450477 (+) True G42208
TU56657 other upstream 1747622 12705559 ~ 12715028 (+) True G42096
TU56588 other upstream 1829221 12632816 ~ 12633429 (+) True G42068
TU56432 other upstream 2121737 12336542 ~ 12340913 (+) False LOC103047294
TU57395 other downstream 414608 14895062 ~ 14899248 (+) True G42605
TU57948 other downstream 1498115 15978569 ~ 15983525 (+) False LOC103036127
XR_002649941.1 other downstream 1498976 15979430 ~ 15984632 (+) True LOC103036127
TU58501 other downstream 2713084 17193538 ~ 17196116 (+) True G43360
TU58763 other downstream 3531719 18012173 ~ 18014499 (+) True G43537

Expression Profile