RNA id: XM_007240131.3


Basic Information

Item Value
RNA id XM_007240131.3
length 4869
RNA type mRNA
GC content 0.49
exon number 8
gene id LOC103044493
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 14483941 ~ 14534170 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGGATGAAGGTGAGGATGGTGAAGAAGACCACGGGGGGATGAAGAGTGTAACAGGAGGGGGGGTGGCGGCGAGCAGGACCCCAAGTAGCGTCGAGCTCGAGCAAGGAAACGTCGAGTCTCGCGCGGCGGCGGCGGACGCGCCCGTTTCCTCTGGTGTGTCGCGCGGTAAAGCTGAGCGGGACTCGGGCGGGGAGGAGGCCGGCATGAGGCGCGTGCTGAACGGAGACTGCCGGAGAGACCCCCCCTCCTCCGTCTCCTCCACcacacaacagcagcagcagccgccgCACGCGCCTGACCACGACCTCCACGCGCACCAGGACATGGATGGCGCCTCTGAACTCGCGCCCAACACCACCCCCTCCACCCCCGCGAGCGCTCCGGACCGGAGGGACCCGCGCGTGTCCTTCTCCACCGCGCCCGGACCCACCAAGACGCCCGAGGACGCGCAGCTCGCGGGGGACGATGGAGAGGCGCGCGACGCTCAGACCTTCATGCAGCGACAGTTTAGCTCGATGCTGCAACCAGGGGTCAACAAGTTCTCACTGCGTATGTTCGGCAGCCAGAAGGCGGTGGAGAAGGAGCAGGAGCGCGTGAAGAGCGCGGGAAACTGGATCATCCACCCATACAGCGACTTCAGGTTCTACTGGGACTTCACAATGCTAATGTTTATGGTGGGCAATCTAATCATCATTCCTGTGGGCATCACCTTCTTCAAAGACGAGACCACCACGCCCTGGATTATCTTCAACGTGGTGTCGGACACATTCTTCCTCATGGACCTGGTGCTCAACTTCCGCACGGGCATTGTCTATGAGGACAATACAGAGATCATTCTGGATCCAAAACAGATCAAAAAGAAGTACCTGCGGACCTGGTTTGTGGTGGACTTCATCTCATCCATCCCAGTGGATTATATTTTTCTCATTGTGGAGAAAGGGATCGACTCGGAGGTTTACAAGACGGCGAGGGCTCTGCGCATCGTCCGCTTCACCAAAATCCTCAGTCTGCTCAGACTTCTCAGACTGTCCAGACTGATCCGCTACATCCACCAGTGGGAGGAGATCTTTCATATGACGTATGACCTGGCCAGTGCGGTGATGAGGATCATTAACCTGATCGggatgatgctgctgctgtgtcACTGGGACGGCTGCCTGCAGTTCCTGGTGCCCATGCTGCAGGACTTCCCCTCCGACTGCTGGGTGTCCCTCAACAAGATGGTGAATGACTCGTGGAGTGAGTTGTACTCCTTTGCCCTGTTCAAGGCCATGAGCCATATGCTGTGTATCGGGTACGGACGCCAGGCCCCGGAGAGCATGTCTGATATCTGGCTCACTATGCTCAGCATGATCGTAGGAGCCACCTGTTACGCCATGTTCATCGGCCATGCCACCGCCCTCATCCAATCCCTGGACTCCTCACGCCGCCAGTACCAGGAAAAGTATAAACAAGTGGAACAGTACATGTCCTTTCACAAACTTCCAGCAGACTTTCGGCAGAAGATTCACGATTACTACGAGCACAGGTATCAGGGCAAGATGTTTGATGAGGAGAGTATTTTGGAGGAGCTGAACGAGCCACTGAGAGAGGAAATTGTCAACTTCAACTGTCGCAAGTTGGTCGCCTCCATGCCACTGTTCGCAAATGCTGATCCCAACTTTGTGACGGCCATGTTGACAAAACTTCGATTTGAGGTCTTCCAGCCACTGGATTACATCATTCGCGAGGGAACCATTGGCAAGAAGATGTACTTCATCCAGCATGGTGTTGTGAGCGTCCTTACCAAAGGCAGCATAGGCATGAAGCTATCTGATGGATCTTACTTTGgagAGATCTGCCTGTTGACCCGTGGGAGGCGTACAGCCAGCGTTCGAGCAGACACCTACTGTCGCCTCTACTCACTGTCTGTGGACAACTTCAATGAAGTCTTGGAGGAGTATCCTATGATGAGGAGAGCCTTTGAGACGGTGGCCATTGACAGACTGGACCGGTTAGGCAAGAAGAACTCCATCCTGATGCACAAAGTCCAGCACGACCTAAACTCTGGAGTCTTCAACAACCACGAGAACGAGTTGATTCAGGAGATTGTAAAGTACGACAGAGAGATGGTAAAGCTGGTGGACCTCCAGAGGCCCCGCGCCATGTCCACTACTCTCTCCACCCACGGGACCATGTTCCCTTCTTCCAGCCAGCCTCCTACCAGCTCTGCCATTGCCTCCCTCCAGCAGGCTGTGGCCATGAACTTCTGCCCCCAGATGGCCAATCCTCTGCAAGGTCACAGCGCTCTCCAGTCCCCTCGTATGGTGCGACGCTTCCAGGTAGTCCAGAGTCTCTCCAGTCCAGGGACCCAGCAGACCCCTCCAGGCTCCCAGTTTACTGCTGGAGCTCTCGTTTCCGCCCTTGCTGCTGGCACGCCCATTCAGAGCCCCTTGGCAACAGCCGGACGAACATTCCAGTACAGTTCCAGCCCCATGGGTGCCCTCTCAGGGTCCCAGCTGTCTTTGGTGCAGCAACATGTCCCCAGCCCTACACATCGAGCAGTCGGGCCCAGGAGCACAATAACGCAGGACGCCCGGGCCCTCTCAGCATCCCAACCGTCTCTGCCCCACGACGGGGTGCAGCCGGCCGCCCCCAGTCCGCCCCAGTCCACCAGAGTATCTTCCACTTCTATCGGACCTCCTCAGAACCTCTCGGGACCCTCTGGCTTTCGAGCCGCCATCCCTCCCAGAATGACTCTCCCACATCAGATGTCAGTAGGAGCGTTCCCACCCGCTTCCCTTCCCCAAATGAGGCCGAGCCACGGCCCGGGACTGCCCAAGAAGGATTCAGTAATCAGCCTTCCGGACACAGACTTTCACATCAGATCTAGATTATCTTCCAATTTGTGACCTTGTGACAGAGTTGGGGGGTGCTGGGTATTCTTCCATTAGTAAGTACGTTTCCCCACTCCTTGCCACTCTTTGGGTCTTAGTCTAAGAATGTAAACAGTGTGACATAAGTGACAAAAAGGGGCGGAGTGACTAGAACTACCCAACTTGACAAATATTAACCATAAAAGTCTGTAAAACGAAAGATTCCAACATCACTTGATATTTCTGTTCTACCCACGAGCATAAACATCAACGTAGCTTCCTCCCACACAGTTTGCCTCTCTTTGTAATCCTTATTTATTGTGGTTGTACTCAAACtttgtataaaagaaaaaaaactgctccCTCTCTTCTACTCTAGTCCAAATGATGCAATGTAAACTGGGCTGGAACGCAGGGGGGATAAAAGTAACGTGCTTCTATTTACAATACAGGAGCGAGAACTGTTTGCGAAAGTGTTTAATGATGCAATGTAGCGGGAGTTTTTTGTGAGTTTAACAGGGTTGGTTAGACAACAGCCTTTTCAGCAATATTAAAACTGCTATCCACCTTATTTTCCATTACAACCAtctttgtttactttgtgttaAAACTTCCGGTGAGACAAAGGATCCGTTGATGTAGATTACATccacagcaataataataatacagaatgAGTAAATATAACTGGATATAGCATATAACAGTTAGAGGATGTCACAGTGATTGGATGATTTTTTCTTGAACAATAGTATTACGaacacagcacaaaaaaaattgcGTTGTTGTGGgaaaccattttatttatttattagtgtatGTAGTGACGCAACAAAATTTATTTGTCTTGCCAAAACCCTAAGCCAAACAAAACACATTTGCAagaggttttcatttattttgacacCTTTTCAccattgcaaacaaaaaaaaaaaattggataatttattttagatttttttccccaattcgGAAGGCCACCGACTTATTATGAAGAAAAGGCAAATGCAAAACTACAATTctaaaatattactattaaataACACTTAACATTTTGAACACCAGCAAAGcacaatacagtgtttttatttcatatattttgcaATGCTGGACCACCGCTGCAAAACGATTGCCAACAAACATCATAAACTGCCAATTACTAAAACGTTGAATAggggttttaatttaaaacaaggGATGCTTCACACTGCCATGTAGCTTTACGCTAATGCTACATTCAAGTGCCTAGCCACATTGGAAAGCGTATATATGTCACAACTCTCTTAGATCATGCTGCATTAAAAGGACTTCAGGATCCCACTGCTGTGCCACCACTGCTGAGAGAAATCCTAAATGAATCattgttcagtataaattaCTGTGCTTTTTCACTTATTCGGCTAAAAATACTGTGGGTATAAGTATAAGCTATCTGGTGCTCCGCTATCTTAGTTTGCTATGCTCTAAACCTCTCCAAATGATGTTAAATAGCCTTTATAACCAGTGTTCACAGCAGTAAGCACTTCAAACTCCATTTACTCTGAATACAATGTGACCATTGATACAAAATGCCCGGAAATTCTAACACAAAGTGGGCGTGGCAGAGAATAAGGTGGATAGAACAGGGGCTTGGGGAGGGGGGTGATAATACACAGATAGCACACGGTTCTAGGTCAAATCCAGAAGAGTTACTGGTCAGTTCTAGAAATGGCCCAGCTGTAGAACCCACATTTCGGTTCTGTCTGGCATTTGAACTGTAATTTATCGCTGCTGTCTGTCTGGGCAGGATTAAAGTGGTAAGTGTGGGCTGAGCTGGGCCGGGACTCGTTTGCTATCTGGGTAGCGTGTTTGACAGGTAATCGATCTGGAAGCCGACACATTCTCACTGAGGGGAACGGctttgattttttcttttttccagacCAAAGTTGGGCCAAAAAtaatgttgtgttgttttttttaaaatgaaacaaatgaaatgaaacaaataCAACTTCATTTGCCTTGATTTT

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0051049 regulation of transport biological_process
GO:0006813 potassium ion transport biological_process
GO:0016020 membrane cellular_component
GO:0005216 ion channel activity molecular_function

KEGG:

id description
K04955 HCN2; hyperpolarization activated cyclic nucleotide-gated potassium channel 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57259 lncRNA upstream 70195 14412289 ~ 14413746 (+) True G42521
TU57265 lncRNA upstream 105911 14377478 ~ 14378030 (+) True G42527
TU57219 lncRNA upstream 177000 14303418 ~ 14306941 (+) False G42496
TU57216 lncRNA upstream 177854 14303541 ~ 14306087 (+) True G42496
TU57189 lncRNA upstream 323230 14160405 ~ 14160711 (+) True G42469
XR_002650009.1 lncRNA downstream 4151 14538321 ~ 14560369 (+) False LOC111192557
XR_002650010.1 lncRNA downstream 4151 14538321 ~ 14560369 (+) False LOC111192557
XR_002650013.1 lncRNA downstream 4151 14538321 ~ 14560369 (+) False LOC111192557
XR_002650008.1 lncRNA downstream 4151 14538321 ~ 14557757 (+) False LOC111192557
XR_002650011.1 lncRNA downstream 4151 14538321 ~ 14557757 (+) False LOC111192557
XM_015603327.2 mRNA upstream 3487 14462650 ~ 14480454 (+) False bsg
XM_007240127.3 mRNA upstream 3487 14462657 ~ 14480454 (+) True bsg
XM_022669685.1 mRNA upstream 3487 14469337 ~ 14480454 (+) False bsg
XM_022669651.1 mRNA upstream 71906 14359209 ~ 14412035 (+) True LOC103041829
XM_015603341.2 mRNA upstream 71906 14363154 ~ 14412035 (+) False LOC103041829
XM_007240250.3 mRNA downstream 88008 14622178 ~ 14660025 (+) True LOC103026177
XM_015603319.2 mRNA downstream 177204 14711374 ~ 14724638 (+) False LOC103026778
XM_022669680.1 mRNA downstream 177204 14711374 ~ 14724603 (+) False LOC103026778
XM_022669679.1 mRNA downstream 177205 14711375 ~ 14725957 (+) True LOC103026778
XM_007240135.3 mRNA downstream 300054 14834224 ~ 14868739 (+) True LOC103045821
XR_002649939.1 other upstream 861899 13617083 ~ 13622042 (+) False LOC103034435
TU56827 other upstream 1033464 13448592 ~ 13450477 (+) True G42208
TU56657 other upstream 1768913 12705559 ~ 12715028 (+) True G42096
TU56588 other upstream 1850512 12632816 ~ 12633429 (+) True G42068
TU56432 other upstream 2143028 12336542 ~ 12340913 (+) False LOC103047294
TU57395 other downstream 360892 14895062 ~ 14899248 (+) True G42605
TU57948 other downstream 1444399 15978569 ~ 15983525 (+) False LOC103036127
XR_002649941.1 other downstream 1445260 15979430 ~ 15984632 (+) True LOC103036127
TU58501 other downstream 2659368 17193538 ~ 17196116 (+) True G43360
TU58763 other downstream 3478003 18012173 ~ 18014499 (+) True G43537

Expression Profile