RNA id: XM_007240135.3


Basic Information

Item Value
RNA id XM_007240135.3
length 3960
RNA type mRNA
GC content 0.47
exon number 16
gene id LOC103045821
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 14834224 ~ 14868739 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctctgcttttacacACGCTTTCCGTCCCAGTAGGAATTCAGGCGAAGGGTTGGACACACggagcggcagcagcagcctgtagAGTGAGGTTTCGAGAAGAAGTGCGAGTTTGGAGAAGAGCTGTTTTCGCCTATTTTCTTCTGAAAACGGCAACTGAAAGgttttaaaGTTTGGACTAGGCTTGAGCCAAGGAGGCGAAGATGGCAATGCAGaTGGGTGAGCGTGAAGGTGTGGTGAAGGTTACAGAATGGCAGAAGACATATTATGCAGGCGATTCAGGAATCCAATCAGGAGCCACCACTGTGCGCTCAGATGATGATGGCACAGAATACAGCTCCAAGAAATACACCTTCACCACCACAGTTACAGAGAACCCTGCAGATCTGGAGTCTCAGTACACAATGACCCGGGCCCAGCGTGTGAGGGCAGCCATGTTTCCTGAGACGATGGAAGGAGGGACCACTATTTTGTCCACACAGTTGGACTCCTCCCAGCAGACCAACGTGCAGAAGTTGGCTGAGCCCTCACAGATGCTCAAGACAGCCATCATTCACCTCATCAACTATCAGGATGATGCTGAGCTGGCAACCCGTGCCGTGCCTGAGCTCACTAAGCTGCTGAATGATGATGACCAGGTTGTGGTGAACAAGGCAGCACAGATTGTAAACCAGCTGACGAAGAAGGAGGCGTCCCGGCGGGCTCTGATGCAGTCGCCGCAGATGGTGGCCGCAGTGGTGAGGGCCATGCAGAACACAGGAGACATGGAGACAGCCAGAGCCACAGCCAGCATCCTGCACAACCTCTCACACCAGCGCGAGGGTCTGCTGTCCATCTTCAAGTCGGGCGGTATCCCTGCCCTGGTGCGCATGCTCAGCTCTCCCATGGAGTCGGTTCTGTTCTATGCCATCACCACTCTACACAACCTGCTTCTGCACCAGGAGGGTGCCAAGATGGCCGTGCGTCTGGCTGATGGCCTGCAGAGGATGGTCCCACTGCTGAAGAAGAGCAATCACAAGTTCCTCGCTATTACTACAGACTGCCTTCAGCTTCTCTCATACGGCAACCAGGAGAGCAAGTTGATAATCCTGGCTAACGGGGGTCCAGAGGGTCTGGTGCAGATCATGAGAAACTACAACTACGAGAAGCTGCTGTGGACGACCAGCCGCGTACTCAAAgttctctctgtgtgtcctAGCAACAAGCCGGCTATAGTGGAAGCTGGTGGAATGCAGGCTCTAGGGAAACATGTAACAGGCTCTAGCCAGCGCCTGTCACAGAACTGCCTGTGGACTCTGAGGAACCTCTCTGATGCTGCTACCAAACAGgATGGACTGGACGGGCTGCTGCAGGTGCTGATTGGCCTGCTGTCCACAGATGATGTGAACATGCTCGCCTGTGTTACGGGAATCCTGTCTAATCTCACATGCAACAATGCTCGTAACAAGACTTACGTGACTCAGAACAACGGAGTGGAGGCACTGATCCACGCCCTGCTCCGGGCTGGAGAGAAGGAGGACGTGGCTGAACCGGCTACCTGTGCCCTGCGCCACCTCACCAGCCGCCACCCAGAAGCAGAGTTGGCTCAAAACGCCGTCCGCACACATTACGGCATCCCTGCTATCGTCAAACTGCTCAACAAACCATACTACTGGCCTGTTGTCAAGGCTGTGGTTGGCTTGATTCGTAACCTGGCATtgtgtccagccaatcaggCACCTCTCAGAGATGCAGACGCTATTCCCAAGCTTGTCAATCTGCTAATAAATGCCCACCAGGATGCCCAGAAGCACGGCTCAGCCAGCCAGCAAACATATCAGGATGGAGTGAGAATGGAGGAGATTGTGGAGGGCTGCACAGGGGCGCTTCACATCATGGCCAGGGATCCCATGAGTAGAGGAGTCATCGCTGACATGAACACCATCCCACTGTTTGTGCAGcTGCTCTACTCCCCAGTGGATAACATAAAGAGAGTGGCTGCTGGTGTGCTATGTGAGCTGGCTCTGGATAAACAGTCAGCAGTGGTCATCGATAATGAGGGAGCCTGTGCTCCACTCATGGAGCTGCTGCACTCAAGCAACGAGGGCATTGCTACTTATGCGGCAGCTGTGCTTTTCCGTATTTCTGAAGACAAAAACGCAGACTACAAGAAGCGCGTGTCTGTGGAGCTCACGCACTCTCTCTTCAAACATGATCCTGCAGCATGGGACATGgCTCACAGCAATGCGATGATGGATCCTGGATATGCACCAGAAGATCTTGATCCTCGCTTTGCCATGCCTGCCTATGGATATGACCCCATGCAACAGGACCTCGACATGGCAGATGATTACCCACAAGGTTTTGACTCAATGCAGAGACCATATGATGCCTGCTAACAACAGaaTACTATTGCTTCAAGCTTAACAACAAGGAAGAGTGTTTTGGAGTGACTGCTTCAGCGTTGCCCTGTAGAGCCTTTCCTCAGCTTGGATGGCTGTGGCTCACACATTCCTCAGCTGGATTGGgtctgcacacacactcacacactgctgtacTATATGCAACTATCACTGGGCTGCGAGGGACAGAATCTGATATTACTTAACACTGCCTTCTCATGAAAACAATGGTGTACACCgtcttacttttattttgtgtgtagaAAACGTTGTATTTTAGGGCTCTTATTTTGGTGGGTGTACGAACACATTTGGTGGCAAGAGGACTGGTAAACTGCCAAAGAGATTTTACTATTGAGTTATTGTGTTGATAATCatgctttttattattctttatgcTATTAAGATTTGACTGTGGAAAATGCTGccagcactgagactgaatAAACTGACCCCAGTTCAGAtctagatcttttttttttttttccttttctctaaATGAGGCTTCAATTTACATAATGATTGTTGGATTTAAAAGCAGGCAAGACTCTTAAACTGgcctattttttctttcttttttttgttatatgatACTTACCTGAGCAAGTTTGTGGCTGGCTGAGTGATGGGGAGAAATGTTATAATATTATGATAATGATGTAGTCAAAGATCTTGTGATGGAAACACAAGCTTTTAATggcttataaaaataataattgttttatgtTCAGACATATCTGCAAAGGATGGGTGTTGCTGCAGATTTTGATGCtaaacagtttttatttgtttatttaaaaacaaattgtaattaaataattctgctattttttattattggttaAATCAGTCTTCAAACAGCTAATGTCATGTTCTATGTGGCTGGAATGAAATCCTGCCGCCACACTGACCCCTTTTCCAGATCAGATTGGGCGTCCCTGGTTTATATACTGTGCTGAAGTGGATTTCAATATAAGGTTTTAACTAAAACTGGCTGATTTGATGCCATTTTAATGTATGGCATTGACTATATATGCATTTTTCCTTGAACAAAAATAACGAACaaattaaatatgtgtaaatgAGTGACTTTCACTTTTTTGCTGCaatattttatcaaaaaaaaaaaatactgtcttCAGTTATTCTTCATCATATCATTCTCAGCCCCCTGCAGCAGAACTGCAGGTCAGGGCAGCACCTCAGCGTGcggggtgtgtgtgcgtgtgcgtgtgtatacACTGGCCTTTTGCTAGCTAATGCTTTCTCTCTGGCACaatacttttactatttttcAACAGTCAGTCCAGATGTACAGACACTAATGAggatagattaacatccaagtCCACTAGTCGACAGATTTAAAAGAGCTGCTTTTTTGCTCTTTACCATGTAATAAATACATCCAATGGTAAGTAAGGGATAAACACTAACATAGTGAAGAGAATGTGGAGTTGTGTCACAGAAAGTGATGATTAACTTGTAGAGGGATTGTTGAATACATGACAAGGGATTGTCTTTATATAGTGTTTCTACTTCATACtttgtagaaaaaaattaaaaaatggttaCTAATTGA

Function

GO: NA

KEGG:

id description
K10056 JUP; junction plakoglobin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57365 lncRNA upstream 65510 14765706 ~ 14768714 (+) True G42590
TU57342 lncRNA upstream 85041 14741274 ~ 14749183 (+) True G42579
TU57357 lncRNA upstream 100939 14728460 ~ 14733285 (+) True G42583
TU57352 lncRNA upstream 101273 14728460 ~ 14732951 (+) False G42583
TU57326 lncRNA upstream 145471 14685299 ~ 14688753 (+) True G42571
TU57374 lncRNA downstream 1617 14870356 ~ 14876200 (+) False G42599
TU57379 lncRNA downstream 1617 14870356 ~ 14874073 (+) False G42599
TU57380 lncRNA downstream 1617 14870356 ~ 14877360 (+) True G42599
TU57381 lncRNA downstream 10280 14879019 ~ 14881077 (+) True G42600
TU57389 lncRNA downstream 22202 14890941 ~ 14903934 (+) True G42604
XM_022669679.1 mRNA upstream 108267 14711375 ~ 14725957 (+) True LOC103026778
XM_015603319.2 mRNA upstream 109586 14711374 ~ 14724638 (+) False LOC103026778
XM_022669680.1 mRNA upstream 109621 14711374 ~ 14724603 (+) False LOC103026778
XM_007240250.3 mRNA upstream 174199 14622178 ~ 14660025 (+) True LOC103026177
XM_007240131.3 mRNA upstream 300054 14483941 ~ 14534170 (+) True LOC103044493
XM_007240145.3 mRNA downstream 103522 14972261 ~ 14994616 (+) True LOC103022023
XM_007240152.3 mRNA downstream 176535 15045274 ~ 15051775 (+) True LOC103023991
XM_022669684.1 mRNA downstream 176868 15045607 ~ 15051775 (+) False LOC103023991
XM_022669683.1 mRNA downstream 176999 15045738 ~ 15051775 (+) False LOC103023991
XM_007240158.3 mRNA downstream 193888 15062627 ~ 15089931 (+) True rtel1
XR_002649939.1 other upstream 1212182 13617083 ~ 13622042 (+) False LOC103034435
TU56827 other upstream 1383747 13448592 ~ 13450477 (+) True G42208
TU56657 other upstream 2119196 12705559 ~ 12715028 (+) True G42096
TU56588 other upstream 2200795 12632816 ~ 12633429 (+) True G42068
TU56432 other upstream 2493311 12336542 ~ 12340913 (+) False LOC103047294
TU57395 other downstream 26323 14895062 ~ 14899248 (+) True G42605
TU57948 other downstream 1109830 15978569 ~ 15983525 (+) False LOC103036127
XR_002649941.1 other downstream 1110691 15979430 ~ 15984632 (+) True LOC103036127
TU58501 other downstream 2324799 17193538 ~ 17196116 (+) True G43360
TU58763 other downstream 3143434 18012173 ~ 18014499 (+) True G43537

Expression Profile