RNA id: XM_022669684.1


Basic Information

Item Value
RNA id XM_022669684.1
length 1965
RNA type mRNA
GC content 0.44
exon number 12
gene id LOC103023991
representative False

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 15045274 ~ 15051775 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CACTCACTGTATACTCACACAGAGACAAAGCTCTTTATACCCCTTGGAACTTATTTAACCAACTGCTGTGTGTTTCTTACATCAGCCACACAGCCAGACAACATTAACAAACAGGTGTACGACGATGCTGTAGAGGAGCGGGTCATAAacgaagaatataaaatatggaAGAAAAACACACCCTTTCTCTATGACTTAGTCATGACACATGCACTTGAATGGCCAAGTTTAACAGTGCAGTGGTTGCCCGATGTGAACAGGCCAGAGGGCAAGGACTATGCAGTTCACAGACTGGTATTGGGGACACACACTTCTGATGAGCAGAACCACTTGGTGATTGCCAGTGTTCAGATCCCAAATGATGATGCTCAGTTTGACGCATCGCATTATGACAGTGAAAAAGGAGCAGAGTTTGGTGGATTTGGGTCTGTGAGTGGCAAGATTGAAATTGAGATTAAGATCAATCATGAAGGAGAGGTGAACCGAGCCAGGTACATGCCACAGAACCCCTGCATTATTGCCACAAAGACCCCTACTTCAGACGTGCTGGTGTTTGACTACACTAAACACCCTTCCAAACCAGACCCCAGCGGTGAGTGCAGCCCAGACTTGAGACTCAGGGGACACCAGAAGGAAGGCTATGGTTTGTCCTGGAACCCCAACCTAAGTGGAAACCTGCTCAGTGCATCAGATGACCATACAATTTGTCTATGGGACATCAGTGGATCTCCTAAGGAAGGAAAGATTGTAGATGCCAAGACTATCTTCACAGGCCATACTGCAGTGGTGGAGGACGTGTCTTGGCACCTTCTCCATGAATCACTTTTTGGCTCGGTTGCTGATGACCAGAAACTCATGATTTGGGACACAAGATCCAATAATACAGCCAAGCCTAGCCACGCAGTGGATGCCCACACCGCTGAGGTGAACTGCTTGTCCTTCAACCCCTACAGTGAGTTCATCCTGGCCACTGGTTCTGCAGATAAGACTGTGGCGCTTTGGGATCTACGTAATCTGAAGCTAAAGCTTCACTCCTTCGAGTCGCACAAAGATGAAATCTTTCAGGTTCAGTGGTCGCCCCATAATGAGACCATTCTGGCTTCTAGTGGGACAGACAGGCGACTTAACGTGTGGGACTTGAGCAAAATTGGAGAGGAACAGTCTGCTGAGGATGCTGAAGATGGGCCTCCTGAATTGCTGTTTATTCATGGAGGGCACACAGCAAAAATATCTGATTTCTCATGGAATCCCAATGAACCCTGGGTGATCTGCTCTGTGTCTGAGGACAACATCATGCAAGTTTGGCAAATGgCTGAGAACATCTACAACGATGAGGAACCCGACACTCCTGCCTCAGAGCTCGAGAGTCAAGCTTCGTAAACTTTGAATCCACCATGGAATAGCAGGGTTCACATCTCCCAAGACTGAAGTACCAACCAGGATTCATCCTTTGTCAATCGATTTGGATGGATtaaatgaaacaataaaaatggcTGTATTTCAGGTCTTCATCCAGAgaccaattccaaataaaccAGTGCTGGATTTAATTTCCCcctctttttttcagaaagtATTATTCAGTTTCCTTTCTATCCCTCTGCACTCTAAACTTCAGGTTTGTTTGGAACTTTCCTTTTGAAACAGTAAACCACATTGTGTCAAATAGGTGTTTTCTAGGATTGCCAAGTTATTGGGCAGTTTTTGATGCTTTTGTTACAAAAAGACGGTGAAAGTTTGTTGCTTTCAGAAAATGCACTTGAGTGGACGCTGCTGtttgaatcatttttttctaaattggaGCAGAGTAAAGCAGTTCTCCAAcccatttttagtttttgtgcGTAAACCTTGTCAACTGCAATAAAAATCTTTTGTAATACCTTTTAAAATGATTGCTCATTTTGTATTCCTAAAATGTTAATGGTTACCATAATTCCACAAAGGAATAAAGTACAAATGATA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006260 DNA replication biological_process
GO:0035098 ESC/E(Z) complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57449 lncRNA upstream 26072 15014943 ~ 15019535 (+) True G42636
TU57441 lncRNA upstream 34633 15010480 ~ 15010974 (+) True G42633
TU57438 lncRNA upstream 43511 15000435 ~ 15002096 (+) True G42632
TU57428 lncRNA upstream 78737 14966150 ~ 14966870 (+) True G42626
TU57389 lncRNA upstream 141673 14890941 ~ 14903934 (+) True G42604
TU57464 lncRNA downstream 5440 15057215 ~ 15057675 (+) True G42647
TU57466 lncRNA downstream 6843 15058618 ~ 15061447 (+) True G42648
TU57669 lncRNA downstream 50701 15102476 ~ 15191970 (+) True G42756
TU57676 lncRNA downstream 112940 15164715 ~ 15165694 (+) True G42763
TU57736 lncRNA downstream 326226 15378001 ~ 15378608 (+) True G42807
XM_007240145.3 mRNA upstream 50991 14972261 ~ 14994616 (+) True LOC103022023
XM_007240135.3 mRNA upstream 176868 14834224 ~ 14868739 (+) True LOC103045821
XM_022669679.1 mRNA upstream 319650 14711375 ~ 14725957 (+) True LOC103026778
XM_015603319.2 mRNA upstream 320969 14711374 ~ 14724638 (+) False LOC103026778
XM_007240158.3 mRNA downstream 10852 15062627 ~ 15089931 (+) True rtel1
XM_007240157.3 mRNA downstream 39596 15091371 ~ 15097213 (+) True zgpat
XM_007240255.2 mRNA downstream 79202 15130977 ~ 15136409 (+) True ptgfr
XM_007240159.3 mRNA downstream 86489 15138264 ~ 15141396 (+) True LOC103026176
XM_022670125.1 mRNA downstream 86592 15138367 ~ 15141396 (+) False LOC103026176
TU57395 other upstream 146359 14895062 ~ 14899248 (+) True G42605
XR_002649939.1 other upstream 1423565 13617083 ~ 13622042 (+) False LOC103034435
TU56827 other upstream 1595130 13448592 ~ 13450477 (+) True G42208
TU56657 other upstream 2330579 12705559 ~ 12715028 (+) True G42096
TU56588 other upstream 2412178 12632816 ~ 12633429 (+) True G42068
TU57948 other downstream 926794 15978569 ~ 15983525 (+) False LOC103036127
XR_002649941.1 other downstream 927655 15979430 ~ 15984632 (+) True LOC103036127
TU58501 other downstream 2141763 17193538 ~ 17196116 (+) True G43360
TU58763 other downstream 2960398 18012173 ~ 18014499 (+) True G43537
TU58814 other downstream 3135264 18187039 ~ 18240232 (+) True G43568

Expression Profile