RNA id: XM_007240158.3


Basic Information

Item Value
RNA id XM_007240158.3
length 3815
RNA type mRNA
GC content 0.48
exon number 33
gene id rtel1
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 15062627 ~ 15089931 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTGTGCATTAGAGCAGTGTGACCTGTAGGGGGCAGGAGGAACGCATTTCGGCTTTTCGGCAGCTCGTAAAAGAAGACGGTGAAGAGCTGTGGCGCGCTGCGGGGATGTGTTGTTATGTAGTTGGGTAAAGTGAAGctgctgtttatttaattattagagGAGCTGATTAGTTGGGTCTGTCTATGCGCTTTATAGCCCAGTCCTCTGCTGTCTGTGTCGTGGTGTCCGCGGCGAGGCTGCAGGATGCCTGTTCTCTCTTTAAGAGGAGTTAATGTGGATTTCCCTTTCACTCCGTATCCATGTCAGACGGATTACATGAACAAAGTCATTGAATGCCTGCAAAGCAAGGTAAATGGAGTTCTTGAAAGTCCAACAGGTACAGGGAAAACCCTGTGTCTGCTTTGTGCGACTCTTGGCTGGAGGGAATACTTCAAGGACTCCATATCTGCCCGCAAGATTTCAGAGAAGATGGGAGGTGCCGAGCTTTTTCCTGACAGGCCCATGTCTTCATGGGGAACAGCAGCAACTGACGGAGACGTCCCAGCATATTACACAGATATACCCAAAATCATCTATGCATCCAGAACACATTCTCAGTTAACGCAAGTCGTCAGTGAGCTGAAGAACACAGCTTACAGGCCAAAGGTTTGTGTTCTGGGGTCCAGAGAACAACTTTGCATCAACCAAGAAATAATGAAGCAGGAAAGCAACCACATAAAGGTCCACATGTGCCGAGCCAAAGTTTCAACCCGCTCATGTCTCTTCTATAACAATGTTGATGAGAAGAGTACTGACAAAGACATCATGAACTCTATCCTGGATGTTGAAGATCTTGTGAAAACTGGTAAAAAGGAAAGAGTGTGTCCATATTATCTTTCCCGCTCTCTGAAGCAGCATGCTGATCTCATATTCATGCCGTACAACTACCTGCTGGATCCAAAGAGTCGCCGGGCACACAACATAGAGCTTAAAGGAGCCGTTGTCATTTTTGATGAGGCACACAATGTGGAGAAGATGTGTGAAGAGTCCACTTCATTTGACCTAACGCCTTATGACTTGACCTCAGCCATTGATGCTGTGGACAAGCTTCTGAGGGAGCAGGCCTCAGATATTGGAAAAGGAGACTCTTCAGAGGATTTTAATGTCGAGTCTCTAAACTCAGgaCTGAAACTGGACATCACAACAATTGCTAAAATAAAACAAATTTTAATGGACCTGGAACTTACTATAAATAGTTTTGAGATGCCCTCAAATAACCAGGGAATTACCAAGCCTGGCAGCTACATTTATGAACTTTTTGAAAAGACACACGTAAACTTTGACACGAAGACTGCGATTGTGGAGGCAATGGAGCAGATCACTGGATATCTGGCAGGAAAGCCTGGTATCTTTCTCAACACCAGCGGACTGCAGAAGGTTGCAGATATAATCCAGTTGGTGTTTGTAGTGGATCCTGCAGAGGGCAGTAAGAAATCACAGATGGTGAACAGCATGAAGCAGTTTAAGGTACACATCCATCCAGACACAAGCAACttcaaaaagaagcagagcaCCGACGTGTGGGCATCTTCTTCTGCGAAGAAACAAGgGAATGTGTTGAGCTACTGGTGTTTCTGTCCGGGCTTCAGCATGCAAGAGTTGCTCAGACAGGAGGTGCGCTGCATCATCCTGACCAGCGGGACTCTTTCGCCACTTTCGTCTTTCACCTGCGAAATGCAAATCCCCTTTCCTGTGAGTTTGGAAAACCCTCATGTCATTCAGAAGGACCAGATTTTCGTCAGCATTGTTGACAAAGGGCCGGACGGAGTGCAGCTCAGCACAGCTTTTGACAAGAGGTTTGTTCCTGAGAACATGGCGTCCTTAGGAAATACTATTGtaaatcTGAGTCGAGTAGTTCCACACGGCCTGCTGGTGTTCTTTCCCTCATACCCTGTATTGGACAAGACTCTGGAATTCTGGAGGGCGAATGGCCATGCTGACCGCATAGAGAATATGAAACCCATGTTTGTAGAACCCAGAGGGAAAGGCACATTTACAGAGGTGATTGATGGTTTTTATGACAAGGTGAATGATCCAAAGTCAAATGGAGGGAGTTTCTTTGCTGTATGCAGAGGAAAGGCCAGTGAAGGATTGGACTTTGCGGACACCTACGGCCGTGGGGTGATCATCACCGGTCTGCCCTTCCCTCCGAGAATGGACCCGAGGGTAGTGCTGAAGATGCAGTATTTGGATGAGATGTGCAGGAACAAATCCAGTGGCATGAAGTATTTGTCTGGGCAGGAGTGGTACAGGCAGCAGGCATCACGCGCTGTGAACCAGGCCATTGGCAGAGTAATCCGCCATCGCGAGGATTACGGAGCGATATTCCTCTGTGACCACAGgtTCAAAAATACAGATGTTCGAGCTCAGCTTCCTTCTTGGGTCCGGCCTTATGTCAGGATGGATAACTTCGGCACTGTGGTTCGCGATGCTGCTCAGTTTTTCCGGGTTGCACAGAAGCTTAGACCAGTTCCCCAGAAGAAGGTGAAAAAGGCAGAGCGTGAGAATTGCTCAGTTCCAGACACTTGCCAGAGTGGAGGAGGCAGTCGTCCAGCTCAGAGTGCCTGGCAGAGTAGCTCCTCTCTGAAAGCCAAAGTACTGGACTCTCATGTTCCCAGCCTAAAGAGGAGGAGACTGGATGAACACTCTGGGAGAGATGGGACAGCTGGGCTGTGTATTCAGTATGAGATGGAGATGAGCTCCACCAAAAAGAAGCCTCTGAGTCTACTTGATGCCCTGGACAACAGTGACCCGAGGTCAGGTGAAGGGGACGACATGGTTGGAGAGGAGAGGGCAAGTCGCTTGTCAACACTCTCTCTACAACATGATAAACGCATGGATGATGAATGCAGGGGTGGGAAACGCAAAATCAGAGTAGTACAAGATCggAAACCTGTAGAATCCAGTGCTGCAGGCAAAGGCAAGGCCTTCATGGTGGAGCTGAAGAGACATTTGAGCCAAGACAGTTTCACGAAGATCATGCATGCGCTCCAGGTGTACAAGGCCACTGATCACCTTGATGACCTTGTGGCGAAAGCAGCAGATCTCCTTTTACAAgaccccaacacacacagtctgcttaGAGGGCTCTACCAGTTTATTCGACCACACCACAAGAAGCAGTTTGATGAGAAGTGTCAGGTGCTTACAGGCCAGGGCTGTGGCTACAAGCATGAGCACTCGCTCTCAAGGGAAGAGAGGGAAACCCTCAGACAACAAACAGtaaaagcgGAAACTACTGAAAAAGCCACAATCAAAGAACTAGACTCGAGCAAACAACTGAATCAAGGCGGCTCTCATTTGGGAACACACAATTTGTGTGGTGTGGGTGCAGTGAAGGATCAGAAACCACAGAAGCCACAGACGTCAGGAAAAGATGGCCAGTTCAGCGCTACCCTTCTGTCCGACATTAAAAAAGCTATTGGTTCTGAAAAAACCAATCAACTATTTATAGCGTTGCAGACGtacaagaaaacaaataattatgaGCAGATGGTATCAACAGTTGTGGGATTGCTGACAGAGCGGGACGAAGACATTGTCCTTTTAAGACggTTATCTGTGTTCATCCCGCCACACCACAGTCAGCAGTTCTCTGAGATGTTAAAGTCTTTGACTGGCAGTGCTTCAGTGACCTGTGAAGAATCAGAAGAAGCTTCCAGTCACCCAGTTCCAGCATCACAACTCTCAGCAGGAAAATCACAGAGCAAGATATCATCCTTCTTCTCCTGACCAGGGGAATCCAGCCAGACATACTGATTTGTTTGGTTAAAAG

Function

GO:

id name namespace
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K11136 RTEL1; regulator of telomere elongation helicase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57466 lncRNA upstream 1180 15058618 ~ 15061447 (+) True G42648
TU57464 lncRNA upstream 4952 15057215 ~ 15057675 (+) True G42647
TU57451 lncRNA upstream 7747 15017800 ~ 15054880 (+) True G42637
TU57449 lncRNA upstream 43092 15014943 ~ 15019535 (+) True G42636
TU57441 lncRNA upstream 51653 15010480 ~ 15010974 (+) True G42633
TU57669 lncRNA downstream 12545 15102476 ~ 15191970 (+) True G42756
TU57676 lncRNA downstream 74784 15164715 ~ 15165694 (+) True G42763
TU57736 lncRNA downstream 288070 15378001 ~ 15378608 (+) True G42807
TU57740 lncRNA downstream 324746 15414677 ~ 15415189 (+) True G42810
TU57739 lncRNA downstream 324946 15414877 ~ 15415189 (+) False G42810
XM_007240152.3 mRNA upstream 10852 15045274 ~ 15051775 (+) True LOC103023991
XM_022669684.1 mRNA upstream 10852 15045607 ~ 15051775 (+) False LOC103023991
XM_022669683.1 mRNA upstream 10852 15045738 ~ 15051775 (+) False LOC103023991
XM_007240145.3 mRNA upstream 68011 14972261 ~ 14994616 (+) True LOC103022023
XM_007240135.3 mRNA upstream 193888 14834224 ~ 14868739 (+) True LOC103045821
XM_007240157.3 mRNA downstream 1440 15091371 ~ 15097213 (+) True zgpat
XM_007240255.2 mRNA downstream 41046 15130977 ~ 15136409 (+) True ptgfr
XM_007240159.3 mRNA downstream 48333 15138264 ~ 15141396 (+) True LOC103026176
XM_022670125.1 mRNA downstream 48436 15138367 ~ 15141396 (+) False LOC103026176
XM_007240160.3 mRNA downstream 49065 15138996 ~ 15141396 (+) False LOC103026176
TU57395 other upstream 163379 14895062 ~ 14899248 (+) True G42605
XR_002649939.1 other upstream 1440585 13617083 ~ 13622042 (+) False LOC103034435
TU56827 other upstream 1612150 13448592 ~ 13450477 (+) True G42208
TU56657 other upstream 2347599 12705559 ~ 12715028 (+) True G42096
TU56588 other upstream 2429198 12632816 ~ 12633429 (+) True G42068
TU57948 other downstream 888638 15978569 ~ 15983525 (+) False LOC103036127
XR_002649941.1 other downstream 889499 15979430 ~ 15984632 (+) True LOC103036127
TU58501 other downstream 2103607 17193538 ~ 17196116 (+) True G43360
TU58763 other downstream 2922242 18012173 ~ 18014499 (+) True G43537
TU58814 other downstream 3097108 18187039 ~ 18240232 (+) True G43568

Expression Profile