RNA id: XM_007240181.3


Basic Information

Item Value
RNA id XM_007240181.3
length 1628
RNA type mRNA
GC content 0.52
exon number 10
gene id wdr18
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 15520524 ~ 15636244 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGCCCTCTTCTTCCAAAATAATCGCGCTTTGTGAAGCCAACATGTCGGCGCCCATGGAGGTAGTGCTATCCGCCGATTCGGCGAGTCAGCTGTGGAACTGCGCGGTTTTCGACCCGCACACCTCAACCAACCTGCTGTCCTACCGCGGCGGAAACTCCTCCCCCCGCGCGCTCACCGTCCTCAACGGAGAGTACATACTGGGAGCCCAGCTGGGCAAGAACTTCATCAACGTGTGGGAGATACAAAGAAAGGATCAGCTGCAGCAGAAAATTGTGTGTCCTGGGATTGTCACCTGCCTAACAGCGTCTCCCAATGGCCTGTATGTGCTGGCAGGCATTGCTGAAGCTATATACCTGTGGGAGGTCTCAACAGGAAACCTGCTGGTCATTTTGAATCGTCACTATCAGGACCTGAGCTGCGTGCACTTCACAGATGACAGCAGCCACTTCGTGTCGGGAGGAAAGGACAATCTGGCGCTTGTATGGAATCTCGCCAGTGTTGTGCAGGTGGATTCCTCTCATGATCCAGAGCCTCGCCACGTGTTGTCCCGTCACTCTCTTCCAATCACGGACATCCACTGCGGTCTGATGGGACCTCAGGCCAGAGTAGCTACTGCATCCTTAGACCAGACTATTAAGCTGTGGGAAATTTCCTCCGGGGAGAtgcttctgtctgtcctgtTTGATGTCAGCATCATGTCTGTGACCCTTGACCCCTGCGAGTATTTTGCATACTGTGGAGGAAGTGATGGAAGTATCTTTCAGGTGTCGCTCTGCAGCACGGCTTTAAGCCGGGAGAAGACGTTCCAGTCAGACAGCGAAGGCAATCAGGTGTTCAAAGGCCACAGgaacTTGGTGACGTGTCTATCCGTGTCCATGGacggcacactgctgctgtcagGTTCCCACGACGAGACGGTGAGGATGTGGGACGTTCAGAGCAAGCAGTGTATCCGCTGCATCAACCACAAAGGTCAGGTCACCAACGCTGCAATCATTCCAGCCCCTGCCAACATGTTCCTTCCGGACAGCCGGCCCGCCATTCCGCTGCCTCGCTTCAGCCGCCACCTCAACCCCACTGAGCAGGGCGAGGGAGCCGGGACCGGAGGAGTGTGTCTGAGACTGGGGACCAGCTGCCAGGAGCCGGAGGAGACCTATCTGGAGAAGGCGGAGCGTCTTCATTCTCTCATGTGCGCCGTCACGGACAAGAGTGTGTTCGGCGATGGAGAGAACACTAAAGTTCGTGTGTCAGAGTTGGAAGAAGAGGTGAGGACCCTGAAGAAAATCAACAAGGACCTGTACGAGTTCTCCACACAGCTCCTTACCAAACCTAATTAAGAGCTACAGAGAGAcagctctttgtttttttagcagAGGTTAAAGAGCTGTACCTGGTTTAAAAAAGAGGACATCTGTGAACAACAACAGCAGCGGGGTTTCAGTTACAatttcaaaaatgtataattgctAACGTATTCCGAATCTGTTTTTCTGAATACGTGATGTGTCTTCTTTTTCTGTGTCCAGTTTTTGAAATACTCACCTTTTTTATTGTGGGTAATAAACAGTTGAACAGGatttcattatcattcattgGTCACATTAAACTGTTACTGTAGTATCAGAGAA

Function

GO:

id name namespace
GO:0070121 Kupffer's vesicle development biological_process
GO:0007368 determination of left/right symmetry biological_process

KEGG:

id description
K14829 IPI3; pre-rRNA-processing protein IPI3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57746 lncRNA upstream 99071 15421152 ~ 15421453 (+) True G42814
TU57745 lncRNA upstream 99402 15420712 ~ 15421122 (+) True G42813
TU57740 lncRNA upstream 105335 15414677 ~ 15415189 (+) True G42810
TU57739 lncRNA upstream 105335 15414877 ~ 15415189 (+) False G42810
TU57736 lncRNA upstream 141916 15378001 ~ 15378608 (+) True G42807
TU58039 lncRNA downstream 398954 16035198 ~ 16037119 (+) True G43035
TU58078 lncRNA downstream 615687 16251931 ~ 16253694 (+) True G43063
TU58077 lncRNA downstream 615979 16252223 ~ 16261729 (+) True G43062
TU58119 lncRNA downstream 755186 16391430 ~ 16398266 (+) False G43097
TU58121 lncRNA downstream 755186 16391430 ~ 16396001 (+) True G43097
XM_015603339.2 mRNA upstream 4029 15500288 ~ 15516495 (+) True LOC103032216
XM_007240179.3 mRNA upstream 93529 15417332 ~ 15426995 (+) False arrdc2
XM_007240177.3 mRNA upstream 93529 15421735 ~ 15426995 (+) True arrdc2
XM_022669678.1 mRNA upstream 106955 15404982 ~ 15413569 (+) True LOC111192508
XM_022669687.1 mRNA upstream 117013 15383810 ~ 15403511 (+) False LOC103030416
XM_007240182.3 mRNA downstream 33383 15669627 ~ 15788889 (+) True grin3b
XM_022669688.1 mRNA downstream 169358 15805602 ~ 15826504 (+) True med16
XM_007240185.3 mRNA downstream 192124 15828368 ~ 15851254 (+) True plppr3
XM_007240186.3 mRNA downstream 230460 15866704 ~ 15929841 (+) True palm
XM_022669689.1 mRNA downstream 245939 15882183 ~ 15929841 (+) False palm
TU57395 other upstream 621276 14895062 ~ 14899248 (+) True G42605
XR_002649939.1 other upstream 1898482 13617083 ~ 13622042 (+) False LOC103034435
TU56827 other upstream 2070047 13448592 ~ 13450477 (+) True G42208
TU56657 other upstream 2805496 12705559 ~ 12715028 (+) True G42096
TU56588 other upstream 2887095 12632816 ~ 12633429 (+) True G42068
TU57948 other downstream 342325 15978569 ~ 15983525 (+) False LOC103036127
XR_002649941.1 other downstream 343186 15979430 ~ 15984632 (+) True LOC103036127
TU58501 other downstream 1557294 17193538 ~ 17196116 (+) True G43360
TU58763 other downstream 2375929 18012173 ~ 18014499 (+) True G43537
TU58814 other downstream 2550795 18187039 ~ 18240232 (+) True G43568

Expression Profile