RNA id: XM_007240209.3



Basic Information


Item Value
RNA id XM_007240209.3
length 1156
RNA type mRNA
GC content 0.42
exon number 2
gene id c5h19orf25
representative True

Chromosome Information


Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 16446720 ~ 16449054 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


GCGTtagaaatgtgaaatgtttaCCACAGAGCAAATCTGAAGAAGTATGACGACAACAAGCAACGTTTCACAGCCTCGTTGGCTGTCAGTATCAGTGAGTTAGCGTTAGTTATTTTTCTACAGAGGAGCTTCATTTATGACAAGAGTTTCTGTACATGTTTCTTAATGTCTCTTAATCACTGGGGGGATTAATGCGTCCTCCCGCTTAAAGCTGAGGTAAAGCAGCGTTAGCCCCCAGAGCTACAGCGAGCAGCCGGAGTGTGTGGAGCTGCACCTGCAGGAGAACAGGATGAATCTGGGCTCTAAAGGCAAGAAGAGGATGGTTCTCCCGACCAGACCTGACCCGCCTTCAGTGGAGCAGATCATAGATGACATAAACCGAGCCTACCCCAACGACCCGGTCTTCAGCATACTGCAGGAACAGTCCACTGAAGACGTCCGCAGTGGATCGACTATCAGTGACGTGGAGGTCAGGTACCTGCAGAGCCGGCGGTTCCTGGAGCTGAACGAGCGGCTTCAGGAGGCACGTTCTGATCTCGTACGGAGAAGAGAAGAGCTGAGGGTGGTGGGGGAGTCTTTAGAACAGAGTGTAACAGAGGTGAAGGACAGAGCCATTTGACTGACCATTTTACATGCTGTTAGAAGCCCACAACACCTTTTAATATGGTGGATGGAGTGGGATAAATGATTAAGTTATGatttgctatgtttttttttttgtttaaacgtCTTTGTAGTTTAAGTGTTTAGAGGTATGAAGCCAGGCCAACACATAATACCATCTAACTACAGTGCCTACTGTGTAAGTATTAATTTAGGCAACATTTTGGagatttgttgttttgttatttgtcACTTGATGTTTGAATTCACAAATTCTGACTTTATTTTTGGACATTATTAAGAAAATTATTTGATTGTGGTCTTTAGCATAACCACCACAATCCTGTTTCTTAAACATTGCTTTTTGATTTTAGCACATGCCACACTTTTACCAAGAGGTAAATATGGTTCCTCATGATTCCTCTTTATATTTAAGTGTTCATGGCGGCTGTTATAACTTCACTGTGGGATGTCTTCACCAAAATCCTGCAGTTAATGCAAGAAAATATGGTTTGTAATACTTTTGCActtattaaatgaaaatgaaaattga

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU58127 lncRNA upstream 575 16440970 ~ 16446145 (+) False LOC103040819
TU58119 lncRNA upstream 48454 16391430 ~ 16398266 (+) False G43097
TU58122 lncRNA upstream 48454 16393772 ~ 16398266 (+) False G43097
TU58121 lncRNA upstream 50719 16391430 ~ 16396001 (+) True G43097
TU58077 lncRNA upstream 184991 16252223 ~ 16261729 (+) True G43062
TU58172 lncRNA downstream 66603 16515657 ~ 16530444 (+) True G43136
TU58201 lncRNA downstream 253196 16702250 ~ 16704192 (+) True G43163
TU58225 lncRNA downstream 266506 16715560 ~ 16715795 (+) True G43180
TU58230 lncRNA downstream 273385 16722439 ~ 16722646 (+) True G43185
TU58233 lncRNA downstream 298772 16747826 ~ 16748678 (+) True G43188
XM_007240210.3 mRNA upstream 433 16440931 ~ 16446287 (+) True LOC103040819
XM_007240205.3 mRNA upstream 12640 16414203 ~ 16434080 (+) True LOC103039257
XM_007240204.3 mRNA upstream 34712 16399544 ~ 16412008 (+) True thop1
XM_022669696.1 mRNA upstream 81567 16358717 ~ 16365153 (+) False LOC103037033
XM_007240206.3 mRNA downstream 56961 16506015 ~ 16525082 (+) True LOC103039567
XM_007240214.3 mRNA downstream 249937 16698991 ~ 16701356 (+) True LOC103042034
XM_007240215.3 mRNA downstream 249937 16698991 ~ 16701356 (+) False LOC103042034
XM_007240217.3 mRNA downstream 259000 16708054 ~ 16712430 (+) True ndufa11
XM_007240218.3 mRNA downstream 278145 16727199 ~ 16759637 (+) True nrtn
XR_002649941.1 other upstream 462088 15979430 ~ 15984632 (+) True LOC103036127
TU57948 other upstream 463195 15978569 ~ 15983525 (+) False LOC103036127
TU57395 other upstream 1547472 14895062 ~ 14899248 (+) True G42605
XR_002649939.1 other upstream 2824678 13617083 ~ 13622042 (+) False LOC103034435
TU56827 other upstream 2996243 13448592 ~ 13450477 (+) True G42208
TU58501 other downstream 744484 17193538 ~ 17196116 (+) True G43360
TU58763 other downstream 1563119 18012173 ~ 18014499 (+) True G43537
TU58814 other downstream 1737985 18187039 ~ 18240232 (+) True G43568
TU59278 other downstream 3273580 19722634 ~ 19770324 (+) False p3h2
TU59277 other downstream 3297559 19746613 ~ 19770324 (+) False p3h2

Expression Profile


XM_007240209.3 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 80.
End of interactive chart.

XM_007240209.3 Expression in each Bioproject

Bar chart with 7 bars.
XM_007240209.3 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 800.
End of interactive chart.