RNA id: XM_007240250.3


Basic Information

Item Value
RNA id XM_007240250.3
length 4462
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC103026177
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 14622178 ~ 14660025 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGCACACAGAGTGTAAAAGACAGAGTGGACACCCATTTACAGCTTTACTGCCTCGTTCGGTCGCACAGACGTGCTCTCACGGGTGGTTTTCTCTTtccctcagtctctctctctctctctctctctctctctctctctttccccctctctccccACTCTCACTCCTTTTCTCtgtgagacacacacatacacacacaattcacTCAGCTCATTCACAGGCACGGGTCAGACAGCCTCACGTTTCACCTTGCTCTGCCCCTGGCTGGGAGAAGAGGGAGCCTCTTGCAAGGTGCAGCCATCAGACAGGACACTTCTTCCACAGCTGAGTGAAGTTTGCTCAAGCAACCTGAGATCTCCAGAGCAACCCGAGAAGAGATGGAACATTCTTTGGAGATGGGATTACAAAGTGTCACATCAGTTCTGTGAAGAGCAAGGCTACCCACAGCAGAGGAACAGCACAGCCAGGTGCCTGGGCCCAGAGGAAGTCCTTTGAGTACCTTGACCCATGACTGTCACCCGTTGGACGAACTGGAAGCTTTGCAAGgttctttctgtctgttcttTCTGAACGGTTCTCGCTCAAAACATCCGCTGTTCACCGGGACGGTGTGGGGCAGTGAAGCGAACAGGGTGCAAAATCATGTCAAATGCTTGCGCAAGGTGCCCCTCGGGAGTTTGACCCACCATGTGCAAATGGAACTCGTCAGCCGAACTCACCTCCATAGGCTCGGCCCATCCCGGGCTACCCCTTCGACCCTGCACCCTCTTCCTCCGGCTGGCGTgcctttttcttctctttctgacGGGCACTGCTCTCGGAGGTTGCCCAAACGGACTGGGTCACGACCCCCTCCACTTGCTGGCACGGGGAACGAACTGCTCGTGGACTCTAGAGCGGCACACTCGCAGCTACAACCACCTGGAGGGAGATGTCCGGCTGCGGCGCCTGTACTCCGCCAACAAGTTCTTCCTCTGCATCGACAAGACGGGCAAGGTGGACGGCACCCGGCGCAAGAACTACCCTGACAGTCTGATGGAAATCCGATCTGTCAGTGTGGGAGTCGTCGCCATCAAATCTGTCAGCACCGGCCTGTACTTAGCCATGTCCAAAAAAGGCACACTCTTTGGATCGGCCAGATATAACCCAAGCTGCAAGTTTAAAGAGCGGATCGAGGAGAACGGCTACAACACGTACGCGTCCCTGCGCTGGAAACACGGCGGGAGGCAGATGTTCGTGTCTCTGAACGGCAGGGGGAAGCCGAGGAGGGGACATAAAGCACGGAGGAGACACCCGTCCACTCACTTCCTACCCATGCTCCCCACATAACTGCAGTCTCCAGTCAGCCTTATCCTTGGTGGCAAGAATATTAATATTGCAGACCCCCCAATCCCCAAGCGCCCCCCCCCAACATGACTGctgtatatttactttttttctactTCATTATTATGTTTTGGTTTTCTTCTGAAAGTGTGAGATAGTATGTTAACTTATAACTCCTTAGCTTCGGATAAAGCTTCTGTAAGGCTTCTAATATTGTACATAAGCACTTATACACTATATTTATGTTACTGCTGAAGAAGCTAAGCATTTACAATGTCTCTAACCAGCTGTTGTACAAGTAATTCACTCATTTCTGATCATATTGTACATACAAAAGTATCCAGACTCTCCTTTAAATGACTGGAGTTTATCTACATTACGGTGCTCTCATTACTGACACAGGCTTTTAGTTGTGCATGTTTGATCACCATAGACAAGATCTGTCAATATAAGATTAACATTCAGAAGACTGGGAGTTGCAGCCAGAAACTTCAGGATAATGTTAAGTGGCACTTACTGTATCAATAACTGACCAATAATTAATCATCCATCATTAGTACCCAACACTGATCAGAACACTGATGAGAAAGTAGCTAGCTATACTAATTCACTATTCCAATACAAGGAATACGAGGAAGTACAACTTTGTTGAAGGCaatgaataacaaaaaaaaacatcaacccAAACTTCCATTTGTCTGCTTTTAGCATTTTGTGGAGGAGAAACTCAGTTATGAAGCTCCTGGGATGATGAAGCGAAGTTCATTCCTAgcttattatattaatagatcTGCTGTTGCACTGAAGttttaacacaaattaaataagGTGAATAAAGCCATctgtaatgcattataaatacaggATTAATTAGATGTGTAAGGTGTCTTACATTTTACCGACATCATTGATAGCTTAATGTTAAAGCATTGAATTTGTTTTGgttcattttttatcattcaCCTGTATTTTCTTAGCTATAAGatcctgattttttaaaaatgcttcttTGATAATATCTAAGCATATCAGTTACAGGATtgtctgtaaaacacacacacacacacacaccctacatcCACTTCTGTCCCGTCaacatgctctctctcacacagcgTTCACCACAGTGAGGGTGGTCAGGTCAGCTTTAACAAGAAACACTCCCCTGAACATGTGTTACAGTGCGACCCGAACACAGCTCATCCATTATAACACAACACAGAGTCTGACAGCTTGTATACTGGTCTAATTCTCCAAATCATGTTCTGTATTATGGGTTCCTATTAAGTCACACTAACATGTTCTCTCCTCAACCTTTAGAACACTGTAAAAGTTTCAACACTCTTAGTCACCGTGTTCCCCAGTGGTGGTGTCGGTTCTGTTCATGTATTATCAGGAGTCTGCTTCTGTCTCTACATCCTCCTGTTCTGACAGCTAGCGCTAAACATCAGCTGCTTAATGGTTAGCAGACACTAGGACTCAGGAGATACTGGTGTCTGGGGTCTAGCATCGGtaataaagttaatttaaaaCTTATATGTGTTCTGCTGCACATTACTGATCACCTGTTTAAAACGTAATTTGTAAACTTGGTCCATggatttctcttttaaaatcATGTAATCTGACACATTTAAAGCCTAGACATTTGCCAAGGTTGGGTGAGTCCTTAAAAGgactttttctttacttcaaGGGTCCCGCCTCTTGTTTTGTGGCACACAAATGTGCTTTTTCTAATTATTAAAGCTAGTATTTTGAgatgtttgtagctgtgctccaaaatctaggaAGCAGCCATAGTAGGGGAAGGAAAGATCATTCATTTTTTCATGAGCAggagaaaaaacatattaatatattcatataattcatattcatacatattCTACAATTAATATTGTGGAATGACCCTAATTGCGCTTTTCCACTGACATGGAACCAGCACCACTCTTCgcgaacctaattttgaaccacCAACCAGAAACGTTCGTTTGCAGCGGGAaccaaagaatactaggttcttcagcgTGAACCGTGGTGATATCTGTAGGGGTGTCTGTTTGGGTGCAACACCCTCTGTTGATGAAGTATGATGTGACATTTtgacggttccactaaaactggttcACTGAAAAGCACCACAGGTCTTAGGAGCCTGAATGGAACTGGTTTAAGAGTTCTTCAGGAGGAAAAGTGCTATGAGTGGTCCTCTGGTTAAGGGTTGAACAGTGTTTGTGGAGAAATTTCCCTAAATTCCAATGTATTAAAGTTCACGGGCTGGTACATCTCAGCCCTACACTGACACATAACCACTAAACAACACAGCGAATAAAAGCTACAAGCAGCTCCCTATATTTATCCTATTTCGTGCCTGTCTTCTGTCTGATAGTCAAAGGCTCTTTACCGCTGTCCTCGCCCTCACAACAGTCCAGGAATTCagtcctctctctttttttcttggcTTTAAGGTAAGGCCATCTGTTTATGCCAGTCTTTTGCTCCGAAAGCACAGAAACAAAATGAGGAGCCTGTAATTATCATTGTTGCTCTACTGTCCTGTCAGTTCCCTCGCCAGAGAGACCAGAGTGATCTCTTGGCAGCGCATAGGCCAGAAGATCAAAGCTATGGACCTTTGATCAGCAGCAAAACCCCCTAAAAACCTCTCCATGGAAAATCAAGGTGGAATGCTTCAAAGGGAGGAGTGCACAAGGACACGGACAGTTCTGCAAGCATGTCCTCTGCCAGCGGTAAGACTGTGTGGCAGTCTTGGGGTATTTTTTCACAGTGGGGAACTCTAGTCAGCCCATGGGCGGCAAAAGCGTCAAAGAATGGGACTTCTGCGATGATGCTCATTTCTGCTAGATAGAAAGTCTAGTCTTAGTGTGTTGGTACTGTTTTAGAACATGAACATTCTAAACTAAAAGACATTACATATGCTTTATTTAAAGATGGTCAGTGATGTTTTTCAGGCTATTAGAAGGAATGGAGcactgtgttctgtgtttgtttcttaCAAAATTATTTCCACCTGTCGTAAAACAAGGCAAGATCGGTTGATTCCTGTGTCATTTCATTGTAACATTGGTGGTTATACACTTACAATATAACACACATGACGACTCTGTTCAATAAAAT

Function

GO:

id name namespace
GO:0033278 cell proliferation in midbrain biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process
GO:0021509 roof plate formation biological_process
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K04358 FGF; fibroblast growth factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650009.1 lncRNA upstream 61809 14538321 ~ 14560369 (+) False LOC111192557
XR_002650010.1 lncRNA upstream 61809 14538321 ~ 14560369 (+) False LOC111192557
XR_002650013.1 lncRNA upstream 61809 14538321 ~ 14560369 (+) False LOC111192557
TU57289 lncRNA upstream 61862 14538385 ~ 14560316 (+) False LOC111192557
TU57291 lncRNA upstream 61862 14550796 ~ 14560316 (+) True LOC111192557
TU57326 lncRNA downstream 25274 14685299 ~ 14688753 (+) True G42571
TU57352 lncRNA downstream 68435 14728460 ~ 14732951 (+) False G42583
TU57357 lncRNA downstream 68435 14728460 ~ 14733285 (+) True G42583
TU57342 lncRNA downstream 81249 14741274 ~ 14749183 (+) True G42579
TU57365 lncRNA downstream 105681 14765706 ~ 14768714 (+) True G42590
XM_007240131.3 mRNA upstream 88008 14483941 ~ 14534170 (+) True LOC103044493
XM_015603327.2 mRNA upstream 141724 14462650 ~ 14480454 (+) False bsg
XM_007240127.3 mRNA upstream 141724 14462657 ~ 14480454 (+) True bsg
XM_022669685.1 mRNA upstream 141724 14469337 ~ 14480454 (+) False bsg
XM_022669651.1 mRNA upstream 210143 14359209 ~ 14412035 (+) True LOC103041829
XM_015603319.2 mRNA downstream 51349 14711374 ~ 14724638 (+) False LOC103026778
XM_022669680.1 mRNA downstream 51349 14711374 ~ 14724603 (+) False LOC103026778
XM_022669679.1 mRNA downstream 51350 14711375 ~ 14725957 (+) True LOC103026778
XM_007240135.3 mRNA downstream 174199 14834224 ~ 14868739 (+) True LOC103045821
XM_007240145.3 mRNA downstream 312236 14972261 ~ 14994616 (+) True LOC103022023
XR_002649939.1 other upstream 1000136 13617083 ~ 13622042 (+) False LOC103034435
TU56827 other upstream 1171701 13448592 ~ 13450477 (+) True G42208
TU56657 other upstream 1907150 12705559 ~ 12715028 (+) True G42096
TU56588 other upstream 1988749 12632816 ~ 12633429 (+) True G42068
TU56432 other upstream 2281265 12336542 ~ 12340913 (+) False LOC103047294
TU57395 other downstream 235037 14895062 ~ 14899248 (+) True G42605
TU57948 other downstream 1318544 15978569 ~ 15983525 (+) False LOC103036127
XR_002649941.1 other downstream 1319405 15979430 ~ 15984632 (+) True LOC103036127
TU58501 other downstream 2533513 17193538 ~ 17196116 (+) True G43360
TU58763 other downstream 3352148 18012173 ~ 18014499 (+) True G43537

Expression Profile