RNA id: XM_007252577.2


Basic Information

Item Value
RNA id XM_007252577.2
length 5721
RNA type mRNA
GC content 0.53
exon number 5
gene id pcdh17
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 6877772 ~ 7013787 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGAGAGATGCGGACAGAGGGGACGGAGTGCGCATCAAAACAGTGAGCGCGCGCACATACGGTCTCATCAAGAGACACTACTGTAACAAGAGAGAAGGAAGAAAGGAGGGAGTCCGTTCAGAGGACACAGGGACGGTGGACACTGTGGACACTGTTGATACTTTGTATCGGAGCGGGCGGCTGTGTCTTTCATTTTTTCCCCcgttttgttggtttgtttgatttttgtgttgtttgttatttatctatttaatttatttaattaatttattatttaacgcAGTCTCGTGCGTGCGGACGTCAACGgacccagtttttttttcttatttgggGTTGCTTTTGGAGAGGAAAAAGGAAGGAAGGACGGCACGTCacgcagagaaagaaagagagaaaaggagagagagagacagaccacCGGGCTGGGGATGTGCCCCCCCTGCATCCGCGCGCTAGAGGACTAAAGGACTAACAGAGGACcactctatccatccatccattcatccttcTATTCATCCATTTGTTCTTCTGCGTCCATCCTCTGTggatctatctgtctatctatattcCGCGCGCGAGGCTCTTTTCTGCGCGTGGCTCAtcaaagagaaggagagagagcgcgagcgcaaaagagaaagagagagagagcacgagcgcaagagagggagagagagagagggagaaggagagtGACTCCCCGTTCCCGCTGCATGCCGCACCGAGCGGAGGCGCGTCCCCGCATTCTGATCAgcgcggcggcggcggcagcagcagcggcggcggcacCAGGAAGGGCACCGCGGCTCCTGCGGCGGCTTTTCTTCGCGGGGGCACTTTACTAGCGATACTTCCACGCGCCGTGGGGCGCGCCAAGGATGTAACCCGGCTCCTGCGCGGCTCGTTTTCTGGCGTTTGCGCTTGGAGGTGTGGAACGGACGGCAGGCTGCAGGACGCCTGGCCACAGAAAGGCAGATTGGTCGCGGTGGtcctggtggtggtggtgtgtccATCCAAGGCGCCCAGGCTTTCAGCAGAATAGCAATTAGATGCTGAGCCGCAGCGTGTGTTGTCAAAACtcaggataaaaaaaagaggaagagagagagagaaaagagagactgCCGGAAGGGAAAGACCTCGCGATGACTCCAGCCAACGTCTTTTCACCATGAACGGTTTTGGATTTGAGCGCATAAATTGTGAGATTTGCCGGGGCTGATCAACAGGTCTGAAGCGTAAAATGCATTGGATACCCATTGGAGAGCCCACGCTGAAAGGGATGTATCACTCCATCTTTCCTTTCCTGCTCCTGTGGGTGCAAGCCCTGACTTTGAAAAACCTGAACTACTCCATACCAGAGGAGAAGATTCAGGGCGTGATAGGAAACATTGCCAAGGATGCAGGACTTGAGCTGGGGGAGCAGGGCAAGAAGTCCAACTTTAGGGTGCTGGAGAACTCAGCGCCGCACCTCATCGATGTGGACCCCGAAAGCGGTCTCCTCTACACCAAGCAGAGGATCGACAGGGAAGCCCTGTGCAAGAGGAACCCCAGGTGCCAGCTCTCCATGGAGGTGTTTGCAAACGACAAAGAAATTTGCATGATCAAGGTGGAAATACAGGACATCAACGACAACCCACCCAGCTTCCCTTCGGAGCAGATTGATATTGACATTTCTGAGAACGCGGCCCCGGGCACCCGTTTCCCGCTGGCAGCCGCGTACGACCCAGACACTCGGGAAAATGGCCTTAAAACTTATCAAATCACTCGAGACGACTACAGCATATTTTCTTTGGACGTGAAATCCAGAGGAGATGGGACTAAATTTCCAGAGTTAGTCGTCCAGAGATCCTTAGACAGAGAGGAACGCAGCCATCACACCCTGATCATCACTGCCACAGACGGAGGAGAATATCCCAAATCGGGCACGATGCAGATTAATGTAAAGGTAACTGACTCGAATGACAATAGCCCCGTGTTCGAGCAGCCCTCTTATGTTGTAGAGATTCCAGAGAACTCTCCTCCAGGCACAGTGTTGATAgatttaaatgccactgacccTGATGAGGGAAGTAATGGGCAGGTTACCTACGCTTTCAGCTGCTATGTACCCGATAGGATCAAAGAGTTGTTCACGATAGACCCCAGAACAGGTGTCATAAAGATTCAGGGCAAAATCGACTATGAGGAAAACCCAATTATAGAGATTGATGTGCAGGCGAAGGATCAAGGTCCGAACCCAATTCCAGGCCATTGTAAAGTGACCGTTAAAGTGCTTGATAGGAATGACAATTGGCCATCAATAGGCTTTGTGGCAGTGCGGCAGGGGGCAGTTAGTGAGGCGGCAGCCCCAGGGACTGTCATTGCTTTAGTGAGAGTCACAGACAAGGACTCTGGGCGTAACGGGCAGCTTCAGTGTAGGATTTTAGGGAATGTTCCCTTCAGGTTGGAGGAGAATTCTGATAACTTTTACACGGTGGTCACAGACCGCCCCCTAGATCGGGAGGTGAAAGATGAATACAACATCACTATTGTGGCCAAAGACAATGGCAACCCTCCACTAAACTCTACCAAATCTTTCACAGTCAAGATTTTAGATGAAAATGATAATGCACCCCGCTTCACAAAAATGGTATATCTCCTTCAAGTGCCAGAGAACAACATCCCAGGGGAATACTTAGGATCAGTTCTGGCTCATGACCCAGATTTGGGGCAGAATGGCACTGTCTCCTATTCCCTTCTTCCGTCTAACGTGAGTGAGGAGTCCATAACCACGTACGTCAACATCAAACCGACTGACGGGGCCATTTATGCCTTGAGGAGTTTCAACTAtgagcaaaccaagtattttgATTTCAAAGTCCAGGCGAAGGATTCAGGTAACCCTCACCTGGAAAGCAACACCACGGTGCGTGTGAGTGTTCTGGACGTCAACGACAACATCCCAGTCATTGTCCTGCCGCTGTTGCAGAACGACACGGCGGAGATCCACGTCCCTCGCAACGTAGGCGTGGGCCACATCATCACCACGGTCAGAGCCGTGGACAACGACTTCGGCGAGAGCGGCCGCCTCACGTATGAGATTTCGGATGGTAACGAGGACCACCTGTTTGAAATAGATGCGGTGACCGGCGAGGTGCGTACGGCCCAGCCGCTGTGGGAGGAGGTGTCTCCTGTTGTGGAGCTCATCATCAAAGTGACAGATCACGGCAAGCCCACGCTTTCTGCCATGGCCAAGCTGGTGGTGAAGGCCTACTCGGGGCCTCTGCCAGAGGGCGAACCGCGTATCAATGAGGAACAGCAAAGCTGGGACATGTCGCTGCCGCTGATCGTCACGCTCAGCATCATCTCCGTCATGCTGCTGGCCGCCATGATCGCCATCGCCGTCAAGTGCAAGCGGGAGAACAAGGAGATCCGCACCTACAACTGCCGCATCGCCGAGTACTCACACCCGCAGCTGGGCAAgagcaagaagaagaagatcaaCAAGAACGACATCATGCTGGTGCAGAGCGAGGTGGAGGAGCGCGACACCATGAACGTGATGAACGTGGTCAGCAGCCCCTCGCTGGCCACCTCGCCCATGTACTTTGACTACCAGACACGCCTTCCCCTTAGCTCACCCAGGTCTGAGGTCATGTACCTCAAACCCAATGCCAACAACCTCAGCGTCCCCCAGGGACACGTGGGCTGCCACACCAGCTTCACGGGGCCTGTGACCAGCACTACGGAGACACCCGTCAACAGGATGTCGATAATTCAGACCGACAGTTTCCCCGCTGAGCCCAATTACATGGGGAGCAGGCAGCAGTTTGTTCAAAGcagctccacGTTTAAGGATCCGGAGCGGGCGAGCCTGAGGGACAGCGGGCACGGGGACAGCGACCAGGCGGACAGCGACCAGGACACCAACAAGGGCTCCTGCTGCGACATGTCCGCCAAGGAGGCTCTGAAAATGAAGGCAACCGGGCTCAAGCCCCAGCCTCTGGAGCAGGaaGAGGACTGTGTGAACTGCACGGATGAGTGCCGGGTGCTGGGTCACTCGGATCGCTGCTGGATGCCCCAGTTCCCTGTAGCGGGTGGAGGAGGTGCAGGCGCCCCCCAGGCCGAGGGTTCTGACTACCGCACCAACCTGTTCGTTCCCGCCGGCATGGAGGCCGTGACCGTGGAGCCAGAGACCTACGAGGCCGTGGGAAACCCCAACGGCAAAAAGACCTTCTGCACCTTCGGCAAGGAGCGGAGGGACCACACCATCCTGGTGGCCAACGTCAAGCCTTACCTGAAGGCCAAGCGCGCCCTCAGCCCGCTGCTCCAGGAGGTTCCGTCAGCGTCCTGTAGCCCCACCAAGGGCTGCAACACCGGCTCGCCGTGCTCCTCGGCCAAGGGCGTGGCGGACGGGGCCGAGGGCAAGCCCAGCAGCAGCCACTACGGCGTTCCAGACGGACAATATGCCTCGCCCAGcaagcagagcagagagcagggCTACTCGGACCCCGTGGCCAAAGTTCTGGCGGAGGCGCGCTCGCGGATCAGCCAGGAGACGGCGGCCGAGATGCAGGACTGTGCTCTGGAGCAGGGCGGGGGCGAGTTGGGAAGGGGCGGCGGGATGGACGCCGACCAGGTAGTCAGAGACATCGATAAACTGCTGCAGGACTGCAGAGGCAACGAAGCCACGTCGGTGAGAAAGTGAACTGGCTGATGCTGCGGACTGCGACGAAACAATGGTAACGAAAAAAACTAAAGGCGGTGGGAGGGACAGGAAAAGCGCGTCGGCTTCGGGAAATCACACTCCGAGAGAGTGGAGCGCGCGAGGGGTCGGGCAGACGAGGACATAAAAAAAGAGACGTCTGACGAACAGAATAGTcgcgtttaaaaaaaaagagaaaacagaaaagaaaatgcCAGGTTGTCTGGACGCCATGTTGTAATTTGGGGGAGGGGACGGGATTCTTCGGGAGTTGCAGAAGTTGCTGCTTCTGGCTTCTAGTGAGCTTTTTCTTCTTCAAGTGCCCACCAGCTAAAAACTTTCATTCTGACATCTTTCTGGAAACAGCGAGTGGCGAGCGTGCGCCGCCCCTCTCGGCCCGAGGGCTTTCTCTCTGAGAGAATGGTTTATTCTGACAATcgcagtttaaaaaaaggggCGCGGACCCGACACGCCCCCGAACCGAAACACAACCATGCTCTTAACTTTTTGGACTTTGGACTTTATATTATCAATGTATGAAGTGCAACATATCTCTGATATCTCTGAACCGTGATTGAGGGGCGGGGTTTGTTTGGAGGGATGCCGGGGTGGTTCATAAGGTGGGGGAGGGCAAGGGACAGCGGGCAGGGGGCGGTATACCGGGATGCTTAATTAAGAAATGTAACTGGTCATTTCTTCACTGGTCATTTCTAATCACATGTGTAAACTGTGTTTTCTCCTCCCCCCCATGTATACGTACATATGGAACATTCCAGAAATGGTGAAactgttactctctctctctctctctctcgttcactGATCATCATTGGTCCTTTGTGTGATCGCTGTCTTTCCACTGTCTTCGATTGGTCACTTGCTTTCCAAGCGACCGGTTTTCACGTGTCCAACATTTAAATTAAGGCAATCACAATCGTGTATATTAGGGACATATTTCCtcaactgtgaaaaaaaaaaaatatctatataaatatatatagataaatatatatataatatatatatatatataca

Function

GO:

id name namespace
GO:0060219 camera-type eye photoreceptor cell differentiation biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K16499 PCDHD2; protocadherin delta 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54917 lncRNA upstream 261604 6615966 ~ 6616168 (+) True G40763
TU54913 lncRNA upstream 336817 6540706 ~ 6540955 (+) True G40759
TU54901 lncRNA upstream 368462 6509072 ~ 6509310 (+) True G40749
TU54892 lncRNA upstream 413401 6464134 ~ 6464371 (+) True G40742
TU54854 lncRNA upstream 679536 6197959 ~ 6198236 (+) True G40709
TU54949 lncRNA downstream 58029 7071816 ~ 7072047 (+) True G40794
TU54994 lncRNA downstream 468971 7482758 ~ 7483102 (+) True G40838
TU54995 lncRNA downstream 481542 7495329 ~ 7495560 (+) True G40839
TU54998 lncRNA downstream 495391 7509178 ~ 7512682 (+) True G40842
TU55068 lncRNA downstream 698547 7712334 ~ 7712583 (+) True G40902
XM_022669530.1 mRNA upstream 1041685 5814515 ~ 5836087 (+) True lims1
XM_022669529.1 mRNA upstream 1042686 5814514 ~ 5835086 (+) False lims1
XM_022669528.1 mRNA upstream 1043897 5814514 ~ 5833875 (+) False lims1
XM_022670144.1 mRNA upstream 1098498 5762651 ~ 5779274 (+) True adamts17
XM_007237231.3 mRNA upstream 1127407 5722889 ~ 5750365 (+) False cers3
XM_007252576.3 mRNA downstream 1088488 8102275 ~ 8162958 (+) True xxylt1
XM_022669536.1 mRNA downstream 1348050 8361837 ~ 8377825 (+) True lsg1
XM_022670142.1 mRNA downstream 1368469 8382256 ~ 8400857 (+) True tmem44
XM_022670147.1 mRNA downstream 1445728 8459515 ~ 8498939 (+) True atp13a3
XM_022669537.1 mRNA downstream 1498317 8512104 ~ 8523308 (+) True LOC103028988
TU54910 other upstream 344098 6533365 ~ 6533674 (+) True G40756
TU54660 other upstream 1566965 5308546 ~ 5310807 (+) False snrpa1
TU54378 other upstream 2742187 4134510 ~ 4135585 (+) True G40318
TU53987 other upstream 4066276 2689967 ~ 2811496 (+) False LOC103029230
TU53995 other upstream 4139555 2735596 ~ 2738217 (+) False LOC103029230
XR_001518717.2 other downstream 812736 7826523 ~ 7826914 (+) True LOC107197696
TU55733 other downstream 2981966 9995753 ~ 10005398 (+) False LOC103037553
trnar-ucg_1 other downstream 3278550 10292337 ~ 10292409 (+) True trnar-ucg_1
trnam-cau_21 other downstream 3741422 10755209 ~ 10755281 (+) True trnam-cau_21
TU56242 other downstream 4557439 11571226 ~ 11580329 (+) True G41828

Expression Profile