RNA id: XM_022669595.1


Basic Information

Item Value
RNA id XM_022669595.1
length 1539
RNA type mRNA
GC content 0.44
exon number 7
gene id LOC103039618
representative False

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 11366265 ~ 11373344 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGTCTCATTCTCCCACTCCCAGCAGCTCCGCCTGTTCACACCGAGTCGAGGACcggaaaaaagaaacacacgCAAGATGTCTGACGAAGGAAAGCTTTTCATTGGTGGACTCAGCTATGACACCACTGAGCAGTCCCTAGAGGATGCTTTCTCTAAGTATGGAACCATTGCCAAAGtTGATGTAATCAGAGATCGTGAGACAGACCGGTCCAGGGGCTTTGGCTTTGTCACATTTGAAAATCCCGATGATGCCAAGGATGCGATGGTTGCTATGAATGGAAAGTCTATTGATGGCCGAATGATTCGTGTGGATGAAGCTGGTAAATCTGGTGGCCGATCTGGTGGGTTCAGAGGTTCTGGTGGCGGCGGCAGAGGATTTTTCAGAGGTGGCAGAGGAAGAGGTGGTGGAGGATATGGAGGAGACAGGGGCTATGGGGGTGGTGACCGTGGGTATGGAGGTGGTGATAGAAGCTACGGCGGAGACCGTAGTTATGGTGGAGGAGACCGGAGCTACAGCAGTGGTGACAGGAGCTATGGTAGCGGTGGAGGTGGTAGCAGCTACTTCAACAGGAGTGGTGGTGGCTACTCCGGTGGTGGCGGTGGATACAGAGACAACAGGAACCAGGGTGGTTATGAGCGTTCAGGAGGCTCCTACAGAGACAGCTATGACAGTTATGCTACGCACgagtaaaaaaaatcctgattcCAAGATCATCCCTTCGCTGGCTGTATTTAAAAGATGTGCTCTTCGAAGAATCTTTTGATTTTCACATTAAGTGTCTACTATTCTCTTAAAACACATTGATAGCATTTTGcagtcctttttttaatttttatttttgtgttcaaTCCTGCCTTCTCTTTTGAGAGGAGGacttctttatatttaattactgtaaaCATTAAAAGCCAATTTAAAGTATATGTACTGACAGTTGTCCCATAAGGAGGATAAtgggttttatttcatttttttgtaattgtaatgaAGCCTCACTGTTTTGAACCATGTTTGAAATCTCTGACCAGTTCAGCACAGCCTGATAGCTTCTAAAGCCAATTGATGCAAAACTTTGGACCAACCTAGAGTGCATGTAGCTTTGAAAAAGACCGGTGTCCTCAAAGCAGGTTCTTGCCTGGAATTCTCTGCCTCTAAAATTCAACCATAATCCCATTCCCAAAAGAAGCTTGACAAGCTGTGATGTGCTCTTTGGGTGGCTTTCATCCTTGGTGTTGCTGAAGTCCTGTAAACGTTCAGTGTCCAAAGAGTGAACTACTTTAATGGGTGATTGCTCACTTGGTGCACGAAATTGATCTGCTAGTGGTGACCCGAGGTACTTTACTCTTTGACGTTTGAATGAAGTAATACTTTTTGATCGTAACTTAAAATTTACACGTAAAACTCAGTCTCTTAATGTCAAGATTTTGTTCCTTCTGGGAAATGTGCTCTGTTCTGTGTACCAACACCTGctatttttttgttcctttttgtaaaaaaatttgGCTTCATGAAGCCCATTAAACAAGTTCCTGAAAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56204 lncRNA upstream 25151 11283237 ~ 11341114 (+) True G41802
TU56121 lncRNA upstream 323251 11042660 ~ 11043014 (+) True G41732
TU56120 lncRNA upstream 331198 11034774 ~ 11035067 (+) True G41731
TU56060 lncRNA upstream 350188 10985208 ~ 11016077 (+) False G41686
TU56055 lncRNA upstream 350188 11012246 ~ 11016077 (+) False G41686
TU56253 lncRNA downstream 297727 11669447 ~ 11709683 (+) True tmem161a
TU56250 lncRNA downstream 332471 11704191 ~ 11709683 (+) False tmem161a
TU56259 lncRNA downstream 345415 11717135 ~ 11718476 (+) True G41839
TU56261 lncRNA downstream 348401 11720121 ~ 11720995 (+) True G41841
TU56262 lncRNA downstream 349612 11721332 ~ 11721804 (+) True G41842
XM_007252620.3 mRNA upstream 165137 11176725 ~ 11201128 (+) True LOC103039314
XM_007252618.2 mRNA upstream 208430 11150635 ~ 11157835 (+) True atp5d
XM_007252619.3 mRNA upstream 208430 11150665 ~ 11157835 (+) False atp5d
XM_007252605.3 mRNA upstream 431383 10869622 ~ 10934882 (+) True LOC103035556
XM_007252603.3 mRNA upstream 505164 10756369 ~ 10861101 (+) True LOC103034920
XM_015606706.2 mRNA downstream 325768 11697488 ~ 11707969 (+) False tmem161a
XM_007252638.3 mRNA downstream 382167 11753887 ~ 11758708 (+) True tmem221
XM_022669608.1 mRNA downstream 390902 11762622 ~ 11767697 (+) True rfxank
XM_015606696.2 mRNA downstream 390920 11762640 ~ 11767697 (+) False rfxank
XM_022669610.1 mRNA downstream 442777 11814497 ~ 12077978 (+) True LOC103025613
trnam-cau_21 other upstream 610984 10755209 ~ 10755281 (+) True trnam-cau_21
trnar-ucg_1 other upstream 1073856 10292337 ~ 10292409 (+) True trnar-ucg_1
TU55733 other upstream 1360867 9995753 ~ 10005398 (+) False LOC103037553
XR_001518717.2 other upstream 3539351 7826523 ~ 7826914 (+) True LOC107197696
TU54910 other upstream 4832591 6533365 ~ 6533674 (+) True G40756
TU56242 other downstream 199506 11571226 ~ 11580329 (+) True G41828
TU56269 other downstream 382623 11754343 ~ 11757209 (+) False tmem221
trnaa-agc_12 other downstream 741412 12113132 ~ 12113204 (+) True trnaa-agc_12
XR_002649936.1 other downstream 962624 12334344 ~ 12340885 (+) True LOC103047294
XR_002649937.1 other downstream 964798 12336518 ~ 12340885 (+) False LOC103047294

Expression Profile