RNA id: XM_007252645.3


Basic Information

Item Value
RNA id XM_007252645.3
length 4859
RNA type mRNA
GC content 0.51
exon number 30
gene id LOC103046586
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 12248637 ~ 12285219 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGACTTGTTCTCTGATAGGGTTTGTGTTGTTTCCTGTGGGTTTCCTGTGGAAAGAATCCAGCTAATCTTTGCTTTTGCTGGTGGGAAAAATGTGGTTTCCCAGAGAGAGCCGTGGTGGTCGGCGGTGGAGGTGACCGTTAGCTGCCTGAGGGCGCAGTCGCAGAGGTCACAGGTGTTTCTCTAGGAGTGTAgcgtggagagagagagagagataatggagGTGAGGTTCAGAGATCTGAAAGCAGACATGGAGGAAATGACGATATGGGAGCAGCACACTGTGACTCTAAACAAAGACCCTAAAGTGGGCTTCGGCTTTGCTGTCTCGGGTGGGAGAGACAAGCCAAATCCAGCCAATGGAGACACGGCGGTGATCGTCTCTGACGTGCTTCCCAGTGGGCCGGCTATGGGCCGACTCCAgacaAGAGATCAGATAGTGATGGTGAACGGAGTGTCTGTGGAGAACTCCACCTCCCTCTACACCATTCAGCACCTCAAGAGCTGTGGCAAAACAGCCAATATAACCATAAAGAGGCCACGAAAGATTCAGGTCCCGTCCAGCAACAGGCCCACTCGCGCTTCCTCTCAGTCCAACCTGCTGGATAATGACCGATATGAGCAGAGACCTCGCCGAGGGTCAGACGGGTACACCCGCCGCCCCCGCAGCGCCACACCAGAGCGCAACGGCCACGACCTGCCCCTCATGTCCGGCTTTAAAAGACTGCCCAATCAGGACGTGCAAGACAAGCCCATCAAAACCACACTGATCAAGAAGAAGCCCACAGATGAGTACGGGATGAAGCTGGGGAGTCAGATTTTCATTAAACACATGACCGCCACCGGTCTGGCTGCAAAAGAAGGCACACTGCAGGAGGGTGATCTTGTGCTGAAGATTAATGGAATGACCACAGAGAACCTCTCACTGCTTGAGACCAAGCACTTGGTAGAGAAGTCCAGAGGTAAACTGACCATGGTGGTCTTGAGGGACAACAGGAAGTTTCTGGTCAGTATTCCTGAGGTGGAGGACAGTCCTGAGAACAGTGCAGATGAGAGATACAAGGAGAGCAGCTCTGAACTGGAAGATATTTCGGATCTGGATACAGATGAGCGAGCGAACAGATCTCGTCCAGTTGCACGAGAGCGACGCACACGCAgAAACAGAACTGAAGCTGCTGCTCCTTCCAAAGCACGTGACTCGTCCCCTCTGCACTCCACCCTGACACGGCCAGTCGCCCAGTCCAAACCCACGCGCAGGGTTTCGTCAGAATCAGAATCCGACCGCAGCAACTCTCCTCCACCTAAACACGACAGCCTCGATAACCGAGACCGATACAGAGTGCTCTCAGGTGTCTCCACGCTGCCGAACCCTCGAGCTTCTCCCGTGCCTTATAACTTGAACGCTCCTCACAACACATCCTCAGCCTCACGGCCACGCAGAGctgtttctgagtctgatTCAGACAGGAGTGCCTCTCCACCACCCAGACGAGAGAGTCCCAAACAAGACCCTCACTCCAGATACAAGGTTCTTCCTGACCTTCCTCCACCTGGCTTGAAGACATCTACCATGAGCCGCTCCCAGGAGCTCCTCAACCGTGGGGCGTCCCCATACAGACCCCCACCACGAGATTCTGAGTCCGATTCAGACCAAAGCTCTGGACCCCCGCTCCGTCAGGCCACGCCCTCCAGCCAGGACTCACGCAACAGATACAGAGCCACTCCTGAGGTAGTAGCAGCTCCCAAGGTCGAGCCTCCAAAATGGTCCAAACCCTCCACACCCATTAGGAGAGGTCCTTCAGAGTCGGAGTCAGAAGAAAGTTACCCCTCAATTCCCAGAGCAGACCACTCATCTGTACACGAgagtGTTCCAGAAACACAAGTGCAATCAGTCCAAAGTAAACCCCAGACATTTTACAGACCACCCTCTCCTGAAAGACCTCCATCTGAAGACTCCTCTGTTTCTGAAAGAGGCCCTTTACCCACCAGGAGATCAGGCAGCAGTGATCAGGACAGCAACCACAGCTCTCCTGCAGTTTACCAGCCGAATTCCACTCTGCGGTCTGACTCATCCAAACCCAGCCTACCCAGGATAAATGGTAAGCCAGTAGAGGAGCCCCTGTACTCCCTGCCTCCAGATGCAGTTCCAGTACCTAACACAGGGTACAGCTCAGACCAGAAATCGGTGGGCTTTGTTAAGGAGGGGAGCATGGGACTCCGGCTGGTGGGAGGAAACGATGTAGGGATTTTTGTGGGCGGGGTCCAGCCTAACAGCCCCGCCCAGAGGCAGGGCATGAAAGAAGGAGATCAGATTCTGGAGGTTAACGGAGTCGACTTTGGTCACTTTACCAGAGAGGAGGCTGCCATGTTCCTCATGAACATTCGTACTGGAGATCGTATCAACATCCTCACTCAGAATAAAATGGACATTTATAAGAAGATCCTGAAGTCCAACCTTGGTGATTCTTTCTACATCCGCACACACTTCGACCACGAGGTGGAGGGCACCCACGGCCTGGCCTTCACTCGAGGAGAGGTATTCAGAGTGGTGGACACAATGCACCGGGGCAAACTGGGCAACTGGCTGGCCATTCGCATGGGTAACGACCTCCACGAGCAAGACAAAGGCACCATCCCCAACCAGACCAGGGCTGAAACTCTAGCCAGCGTGGAGCAAACTCAGAGAATCCAGGGAGCCGAGCGACAAGCATCAGGCCCCAGGGCAGAGTTCTGGAAATTACGGGGTCTCAGAGGGGCCAAGAAGAATGTGAGAAGGACACGAGACGACCTTCTTCAGTTGACCATCCAGGGCAAGTTTCCAGCATACGAGAAGGTGCTGctgagagaggCCAGCTTTAAACGTCCTATTGTTGTTATGGGTCCACTGAATGACATTGCGAATGAGAAGCTGTCTAGAGAAATGCCCAATGAATATGAGATTGCAGAAATGGTCCCAAGGAGTGGTGGAGACAGTGCGTCCTCAGTCATTAAGCTGGATACTgtgagaaaaatatcagaacagGACAAGCATCCCCTGCTGGACATCACCCCTACTGCAGTAGAGAGGCTCAGTTATATTCAATATCACCCAATCGTGATGTTCTTGGATCCACACAACCGCAAAGATGTTAAAACCATGAGGCAGAGATACTCTCCCAACTCTAACAAAAGCTCACGCAAACTCTACGCCCAAGCCCTGAAGCTCAGGAAGCACTACAGCCAACTCTTTGCTGGCCGTATTGACCTGCAACCCAATTCAAACGTGTGGTACGAAATTCTTAAAGACAAGATTCGCCAGCAGCAGTCTAAGCCTGTCTGGGTCTCAGAGATCACGCTTGAAAGTGGTGTTGATGAGGAACTGGATGCCTTCAACCGCGCCAATAACGCTGATTATCTCAGTGGAGCCAGTGACTACGAGGACACCGACGGTGAAGCCTACACTGATGGTGAGGCCTACACTGACAACGAGGATCTGGAAGAACCCCCCTCCACCCAGCCGGGCATCATCGGGCGGAGAGGCACTGCTCTGGCCCGCTCCTCAGAACCAGCAGCCAGACAGAGCCCCAGCCCCGAGCTGGCCCAGGATGAGGAGCATGAATATACCTTACCCCCTATCCTCCACGTCCCAGAGCCACTGTCTCTACGCCACTCCCCAGTGGCACCCCCAGACCTAGAGGATTCTCCATCACCCACCCAGCGCAGCTTCTCCGACTCGGACTTCAACACCGACTTCGCTCCACCCACCACCCCCTCAGAGGGCCCACCAGATTTCAGGGCCCCGGACCCCACAGAGTTCTTCCCAGAGAGCCCGCAACCGGTCACTCTGTCCACCATAGAGGACAAACTACAACAGacTCGTATGGCAGAACCAGAAGTGAAGCCGGCTCCCCCATTTGTTGTGTTGGCACATCATGAAGCAATGATGATGAGAAGAACCCAAATCAGAGGCAGCGACAGCTCTgcggatgatgatgatgatgactatAATGACGAAGATGAAACTGATGATATGGAATGGGGTCCAGCCACAGAGCTCTAATACACCCAGACTTATCTGATACACAAGACGTTTGTGGACTCATGGACAGCCATATCTGTGGAAACAGtgtgaaaatgattttttattaaagagccGACCTTGTGGACGTACTCTAAGCACTCTGACCTCTGGAAAAATTTTCTAAGGATTAATCTGGGGCtcctttgatttgatttttttttctacactgttGGACATTTTTACAGTGAATTGTTGCCTTAGAGAGATTGGGCATAttttataaactgtttttaatctcaatgtgtattttaaaataaaagcatttaataGTCATCAGTGATGGTAAATGCAAGCAGTAGTCACACCATATTGTAATTAGGCACTATACTACACACAAAGGCAATATGAACAATGAATAATGAACAATGCTGACAGACTAGACCAGATGAGCCTTCctgcctaaataaataaacaatacacaAAATAGCCATAACATTTAAACAGCAAAACCACTGACAAATGAACAGGTAAACAGGTAAACACTGTGACATGATAACTATAGACAACAGAAGTCAGAAAATCTCCAAATAGGCATAGGCAGGTCTTGTCAGGTGTTCCCGGCATGCAGTGTTGGCTACCCACCTAAAAACTTGCAGGACAGATGGGTGCATGCAAAGATACCAAAGCCTTGTCCTGTTTCATTATTACATTGTTCTGTTTCGAAGATAcatattcagtgtgttttcagtcccttgaaaataaaacagtatgatGGTTTTGACGACACTAATGTTTTGAAGGTTCAAAGGTTATTTTTTATGGaaataactaaattattaaAGAAAGATATTCAAAACTTGAA

Function

GO:

id name namespace
GO:0030104 water homeostasis biological_process
GO:0048871 multicellular organismal homeostasis biological_process
GO:0005923 bicellular tight junction cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56373 lncRNA upstream 135985 12118432 ~ 12121430 (+) True G41906
TU56262 lncRNA upstream 535611 11721332 ~ 11721804 (+) True G41842
TU56261 lncRNA upstream 536420 11720121 ~ 11720995 (+) True G41841
TU56259 lncRNA upstream 538939 11717135 ~ 11718476 (+) True G41839
TU56250 lncRNA upstream 547732 11704191 ~ 11709683 (+) False tmem161a
TU56429 lncRNA downstream 334 12285553 ~ 12285980 (+) True G41954
TU56441 lncRNA downstream 42676 12327895 ~ 12328238 (+) True G41961
XR_002649938.1 lncRNA downstream 146808 12432027 ~ 12437339 (+) True LOC107197698
XR_001518718.2 lncRNA downstream 147188 12432407 ~ 12437339 (+) False LOC107197698
TU56463 lncRNA downstream 169276 12454495 ~ 12456795 (+) True G41975
XM_007252641.3 mRNA upstream 17009 12145212 ~ 12240406 (+) True LOC103045466
XM_022669612.1 mRNA upstream 17009 12183647 ~ 12240406 (+) False LOC103045466
XM_007252642.3 mRNA upstream 17009 12200296 ~ 12240406 (+) False LOC103045466
XM_022669610.1 mRNA upstream 179437 11814497 ~ 12077978 (+) True LOC103025613
XM_015606696.2 mRNA upstream 489718 11762640 ~ 11767697 (+) False rfxank
XM_007252644.3 mRNA downstream 2698 12287917 ~ 12323072 (+) False LOC103046074
XM_007252643.3 mRNA downstream 2952 12288171 ~ 12323072 (+) True LOC103046074
XM_022669613.1 mRNA downstream 56395 12341614 ~ 12384922 (+) False LOC103021640
XM_022669614.1 mRNA downstream 56397 12341616 ~ 12388429 (+) True LOC103021640
XM_022669615.1 mRNA downstream 56397 12341616 ~ 12388429 (+) False LOC103021640
trnaa-agc_12 other upstream 144211 12113132 ~ 12113204 (+) True trnaa-agc_12
TU56269 other upstream 500206 11754343 ~ 11757209 (+) False tmem221
TU56242 other upstream 677086 11571226 ~ 11580329 (+) True G41828
trnam-cau_21 other upstream 1502134 10755209 ~ 10755281 (+) True trnam-cau_21
trnar-ucg_1 other upstream 1965006 10292337 ~ 10292409 (+) True trnar-ucg_1
XR_002649936.1 other downstream 49125 12334344 ~ 12340885 (+) True LOC103047294
XR_002649937.1 other downstream 51299 12336518 ~ 12340885 (+) False LOC103047294
TU56432 other downstream 51323 12336542 ~ 12340913 (+) False LOC103047294
TU56588 other downstream 347597 12632816 ~ 12633429 (+) True G42068
TU56657 other downstream 420340 12705559 ~ 12715028 (+) True G42096

Expression Profile