RNA id: XM_007258133.3


Basic Information

Item Value
RNA id XM_007258133.3
length 3531
RNA type mRNA
GC content 0.47
exon number 2
gene id mex3b
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 5001765 ~ 5006585 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttttgttttgttttgttagatttttctcctcctcttttctctcttttccccctTTCCcaatttttctctatttctctgcaCCAGGCTCTCAAAACTGAGCGGTGCTGCTTTTTtaatcttctttctttcttcccccCTGTTTTTcccctcttctctcctctcctttccTTCCCTACCCACCCGTCCGTCCCACCGTCACCCCTGTGTGCTCAATCCCTCCCTGCtctgctttatttcttttatcctttttttatttttctctattatttctattttcctttcctttctttattttactcacTCACTACTCCTGCTGCCCTGCGGAGGAGCccggagcagcagcagccggaGCCCGAGCTCCAACCCAAacaccagctccagctccagcagcagccgCGATGCCGAGCTCTCTGTTCGCTGACATGGAGCGCAGCGGCGGCGGCCAGCAGGGCGAGGCGCTGGACGACCAGCGCGCCCTGCAGATCGCCCTGGACCAGCTGTCCCTGCTCGGCCTGGACAACGACGAGTCCGGCGCCTACGACAACGAGCCGCGGAAGAAGAGCGTCAACATGACCGAGTGTGTGCCGGTGCCCAGCTCCGAGCATGTGGCTGAGATTGTGGGCAGACAAGGTTGCAAAATCAAAGCCCTGCGAGCGAAGACCAACACCTATATCAAGACTCCGGTGCGAGGGGAGGAGCCGGTCTTTGTTGTGACAGGCAGGAGGGAGGATGTAGCCATGGCTCGGAGGGAGATTATCTCTGCAGCGGAGCACTTCTCCATGATCCGAGCGTCGCGGAATAAAAACAGCAGTCTGAACGGGAGCACGCCTGTGCCAGGCCCGCCCAACCTACCGGGGCAGACCACCATCCAGGTGCGGGTGCCCTACAGGGTTGTCGGTCTGGTGGTTGGGCCCAAGGGAGCCACCATCAAGCGCATCCAGCAGCAGACGCACACCTACATCGTCACGCCCAGCCGGGACAAAGAGCCGGTCTTTGAGGTCACCGGTATGCCAGAGAATGTGGACCGTGCCCGAGAAGAGATCGAGGCACACATCGCCATGCGGACGGGAGGCTTGATCGAGTTCAGCTCGGATGAGAACGACTTCCACGCCAATGGTACGGACGTGGGCTTTGACCTGCATGGCCACCACACTGGACTGTGGAGCAACAAGACTGGCTCGGGCGTGACGCCCAGCTCAGGCCGCAAGCCCTTCTCCAACTATCGTAACGACAGCTCCAGCTCACTGGGAAGCGCCTCCACCGACTCTTACTTTGGCACCAACGGTGGCACGAGGATGACAGACTACAGCCCGCCGAGCCCTGCCCTCAGCTACACTGCTTCAAGCAATggcaacaataacaacaacaacctGAACGTGAACGTGGTCAACGGCAACGGCTTTGTCTACAACAGTGACGTCATCTCTCCAGACTGCGGCGACCTGGGCTTCGACCCTTCGCCAGGATTCGACCCCACTCCGGCTCCCCCTGGCTTGATTTGGTCCCAGTATGAGCGTGCCAACGGCACATCTACCAGCCCATCCTCCTCCATCTTCCCCGCCAACAATGCTTCCACCAATGCCAATGGTCTgctggccaatcagaggaggGCAAACGGGGTCAACTGTGGCCAGCCCAGGCTATCCCCGCCCCTTCACCACGTGGGAGGCAGCGAGCACCCACTGGCCCGGAGAGTGCGCAGTGACCCTGGTGGAGGTTCCTTGACCTTCCCCGGTTATTCGCCCAACAGCATCTCCGCCCTGGTGCCCTCCGACTCCTCTGCCTCTTCCTCGtcgtcctcttcctcctcttcctcggGGACAAGCCGCAAGGGCAGCCGGGACTGCTCGGTTTGCTTTGAGAGCGAGGTGATCGCTGCCCTGGTGCCCTGTGGCCACAACCTCTTCTGCATGGAGTGCGCCAACCGCATCTGCGAGCGGAACGAGCCGGAATGCCCCGTCTGCCACGCTGCAGTTACTCAGGCAATACgtatattttcttaaaaaaaaaacactaaatgcaTAAAAAAGGACAATGGTGACGTGCCCCCGTGACTACAATAGCAACAAAACCACCAACTGACTGAACATTTCCCTACAAACTCCTGTTATTATGGCTTTACGAAAACTCATCTAATAATAACGACGTGTTTatcatatgtgtatatacatatgtatgtgAAAGCTGCAGTATCCAAAAAGGGACACCCGATTAGAGGGCTCCGGTGTAATTGTTTATAACTGTACTGTAGCTTGGGACAAATATTTTCAACAtctaatgcatgttttaaatattaacgCTTAGTAATTAATAGTTCTAGTAAAAATAATGTACAAAAGGATGAAGTTCCGCCGAGGACGCAAGTCTCGCCAGAGGTACCCGGTTTTGTCCGTTCCAGTTCCGTTTGACTGTTAGTATAAAAAACGACAACTTCTGCCTGTCGGTTTGTACACTGAGGGAATGTAAATGCTAGCCGAGCAGGTGGACGCGTAAGTTGTAGGGCTTTTACTCTAACAGCATTAATAGACTTACAGCGGCGACAGTGGAGATACTGCAGCATCAGAGCAACAACATATCCTGCATATATATACTACGaacaaaaaagtgagagagggagagaagaaaaaaacaaacgacAACCACAACAAGGAGAGAAATCCACATGTCgagttttaaatattaattacattaatacagATTGaagtattttattcttttttgacTTGAAAGATTATATTTCGTATTGCAAAGAtgtttacaaatattttaatttaagttcaATGAACTTTTTTGTAGCTGGGTTCaaatatcttttattttttagtatggCCTTATGGCAACAAacactgtattattttaatatcacacagagaaacacacacacacacacacacacacagccgtgGATGGATGTtcagataaatgttaaaaatgtgcatttaaCAGTATTCTGTTGTTGGGAACTGAAGGTTTATATaggttcagcaaaaaaaaaaaaatcacacaacaacaacaacaacaaaagtcttttaaatctgtttcacccagcatattttttattcagtaatataaagcatattttattctatattattaCGAAACATTCAAATGTATAAAACTTAGTAAGTTGGACAAAAGGAAACCGTTTATGCTTTCTAAAATTTGTATGAATTAGATTCCAGTGGGTATTACAGACTTCTGTTGCACCACTATAGTTTTagtatttctattttaataCGTTTGTTTACCActtgtttatgtatatgtagGTGAAGTTACTTGAGCGTAAAAGTACTTTATTGAgcaaagtttaaaaacaaagtatattttattttatgataataaaaaaatggcctTTAACCTCATGGTCaaatactaatattatatttgCTGAAACAAGATTTGAAATGTATCAagagttttatttttctgacATTTAAAGTTCTACATGATAAAGTAAAACTTAAGTAATGGTGCtacttcatgtttttttaagtatttctatatAAGTCCAATAAAATGGTACATGAA

Function

GO:

id name namespace
GO:0003723 RNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K15686 MEX3, RKHD; RNA-binding protein MEX3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54495 lncRNA upstream 85792 4913889 ~ 4915973 (+) True G40424
TU54496 lncRNA upstream 85792 4913889 ~ 4915973 (+) False G40424
TU54472 lncRNA upstream 250196 4697670 ~ 4751569 (+) True G40401
TU54473 lncRNA upstream 429035 4572453 ~ 4572730 (+) True G40402
TU54462 lncRNA upstream 469919 4516075 ~ 4531846 (+) True G40392
TU54583 lncRNA downstream 56064 5062649 ~ 5062903 (+) True G40504
TU54609 lncRNA downstream 126945 5133530 ~ 5163329 (+) True G40511
TU54595 lncRNA downstream 141040 5147625 ~ 5154524 (+) True G40510
TU54611 lncRNA downstream 152406 5158991 ~ 5163329 (+) False G40511
TU54612 lncRNA downstream 152406 5158991 ~ 5163329 (+) False G40511
XM_022669519.1 mRNA upstream 68736 4762193 ~ 4933029 (+) True efl1
XM_022669516.1 mRNA upstream 257213 4535235 ~ 4744552 (+) True LOC103028701
XM_022669518.1 mRNA upstream 311767 4535234 ~ 4689998 (+) False LOC103028701
XM_022669515.1 mRNA upstream 486380 4504397 ~ 4515385 (+) True LOC103046723
XM_007258141.3 mRNA upstream 511167 4434552 ~ 4490598 (+) True LOC103022507
XM_022669521.1 mRNA downstream 299102 5305687 ~ 5310922 (+) False snrpa1
XM_022669523.1 mRNA downstream 306055 5312640 ~ 5320139 (+) True selenos
XM_007260216.2 mRNA downstream 321643 5328228 ~ 5424313 (+) True chsy1
XM_022669526.1 mRNA downstream 703115 5709700 ~ 5717935 (+) True lins1
XM_015602437.2 mRNA downstream 716291 5722876 ~ 5750365 (+) False cers3
TU54378 other upstream 866180 4134510 ~ 4135585 (+) True G40318
TU53987 other upstream 2190269 2689967 ~ 2811496 (+) False LOC103029230
TU53995 other upstream 2263548 2735596 ~ 2738217 (+) False LOC103029230
TU53708 other upstream 3215244 1783424 ~ 1786521 (+) False muc2
TU54660 other downstream 301961 5308546 ~ 5310807 (+) False snrpa1
TU54910 other downstream 1526780 6533365 ~ 6533674 (+) True G40756
XR_001518717.2 other downstream 2819938 7826523 ~ 7826914 (+) True LOC107197696
TU55733 other downstream 4989168 9995753 ~ 10005398 (+) False LOC103037553
trnar-ucg_1 other downstream 5285752 10292337 ~ 10292409 (+) True trnar-ucg_1

Expression Profile