RNA id: XM_007258147.3


Basic Information

Item Value
RNA id XM_007258147.3
length 5850
RNA type mRNA
GC content 0.49
exon number 22
gene id il16
representative False

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 3690718 ~ 3750084 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agagaaagagagggagagagggaaaagtTGTTCCACAGAGCACCTTTTATCACCTagcacacagaaacacagtctCCTCCACTTCTGCTGgactacagctctgaaacactccacacacacttcccAGCAGGCTACACGTGGACGCTCTGGTCAGGTCAGATGATCAGCTTCGaGCGGACCCCTCCATTAGCGGCCGTGTGGATGGGGAGAGATCCTCCCTCTGCGGCCATCATGCCTCTGAAAACCACCCAGACGCAGCAGAGGAGGAGAATGAGGAGGATGGAGAAGGCCAAGGCTGGACAGCGCTCCAAAAAGCTGGCCATCCTCTCCCGTTCCCTCATCATCTGCAGCTCCAGGACCAGCGATGACCTCCCCAGCCCAGAGGAGAAGTATGTGTACAGTGACTGGAAAGAAGACAGCAAGGGATGCCATCTGGATGGACCAATGGGGCGCCCAGAGAAGGATCTGAGCAGGAGCGCAAGCCTGCAGGCACCGAGGAGCACAGAGGAACCCAAGAAGAACATCAGGAGGTCCTTCTCCATCAGGGAAAGCAGTTTCTGGAGAATGTGTGTGGCTACTGGAGAGGAAGGTGGGCCGCTGGGGCCTCGGGTGGGTGATAACGACCTCCAGCCCAGTGACAATATCCTTACTGTCAGCCATGTGCGAAACGGAGGGCAATTACACAGgGACACTTATATCCACTATGGTGAGAGGCTGGCCCCGTTTAATGGGCAGGTTGTAAATGACCACACAAAACTCCAGGCTGAGCTGGAAAGGCAGTCTGCAGTGAAGACTGTCCCCGGAACAGTTTTCTCCTCGTGTGAAAGCAGTGGACCATTGGTGAATGTTAATTCAGCTGATCTTTTGGCCTacagaaaagaagcagtggGGAACTGCCTAAACCCAAAGaTGCCCATTATTGAGGTATCAGAGGTTGATATGAAAAGCTGTGAGGAGGATACCAAAGATGAAAACTCTGAAGAAACAGCCTGTAAGAGGACTCGCTCCAACTCCACAAGCGTTCACCCGTACTGGATCGGAGACTTGGAGACCATCATTATGAAAACTCCAGAGTTCCCGTGTCATGTCCACAATACCACAGGCTTTTACGGCAACAGGAAGTCTCTCTCCCAACAGCTGGAATTCCCTCACAGCATTCCACAGGCCATTCCCAGGGCTTCTCGTTctctcagctcagctcattTAGTCCACTCCTGCAGCAGCGTACAAGCATTCATCATCTGCAATATAGTCCTAATGAAGGCTCCTGGAAAGGGTCTGGGCTTCAGTATAGTGGGAGGCAGAGACAGCATGTACGGTCCAATGGGAATCTACGTGAAGACGATTTTTCCTGGTGGTGCAGCTGCAGCTGATGGAAGACTGCAGGAAGgaGATGAAATTCTGGAGCTGAATGGAGAGTCTCTACATGGTCTTTCTCATGAAGATGCTTTACATAGGTTTAAACAAGTGAAGAAGGGTTTGCTGACGCTGGTGGTGAGGACGAGTCTGCGGATGGACGCTCTGTCGGGCAGCGGGACGCAGGCTGCTCAGCTCTGCCGCTCCAGGTCACTCAGCTCTACCGCAGGAATCAGCAGAACCAGCGCTGACCTGGCTGAATACACCTACCTGGGAAACGCTGTCAAGGCCAGAGACCGGATCATGATGGAGATCATCCTGCAGAAAGAGGTTGGCGTGGGCCTGGGCATCGGTCTGTGCTGTGTGCCCTCTGCTGAGGGCTGCCCGGGTATCTACATTCACACCCTGTCACCAGGCTCCGTGGCACACATGGATGGACGCTTGAGATGTGGCGATGAGATCATGGAGATTAATGACACGGTGGTTTGCAGCATGTCATTAAATGATGTGTACGCGGTTCTGAGCCACTGCAGTCCGGGTCCGGTTCAGGTCATCATCAGTCGACACCCCGACCCAAAAGTTTCTGAACAGCAACTGAATGAGGCAATTGCCCAGGCGGTAGAGAACAGCAAACTGAAGAGAGACAAGAGCCAGTGGAGTATAGAGGGTTTGAGACGCCTGGAGCCCACACATTGTTCACATAGCCGGCAGAAGTGTGAGCACTGTCTGGAGCGAAGTCAAAGCCAGCTGACCTGCAGACGGGCCCAGAAACCCATGATCCGCTCATGCAGTGAAGGTGCCTACAGTCAGCGGTGTCCAACAGCCAGCACCAACACACTGCCCTATCTGCCCTCAGAGCAAATCACCAGGGTACACAGCATGGACACCTCAATCACAGCCAACTGTGAAGCTCCAACCAATGGGAGGTTGTCCCCGGCTTCGTACGCCGAGGACGACTACAACGTACCCTACAACTCTCCAGTGAACTTTGTAGGTCAGCAGGCAGTAGATGGAGCGGTTGGGAGGCCGAGGGGGTTTAAAGCCAGACCGCGCTCTCTTCCTCGGCGGTACTGCCGGAGACAGGATGTCACCAGCGAAGAGGCGTTAACCGACTCAAGCGGCTCCAGTCGAGGTTCaccagagaaagaggaagaccATCTGCCTTCACAATCTTACTGCCAGGAAGTGGACGAATGTTCAGAAGGAACTAAAACAGCACTCTCAGAACCTGCTACTGCTGCTGGAGCGCCTGAAAACTCACACAGGGACTGCAGACAACACAAAGGCTCAGAGACCTCCAATCACGTGTGCAGTCCAACAAAGCGAGCAGGCCTGAGACGTCAAGCCAACGTGGACTCAAGCCCAGATCAGCAAATCGACCCTTGGGTGAAGCAAACAGAAGATAGTCCAGAGAAGCACCTCTACCACCGTAAAACCATGAGTGACCACAATGGGAATAGTGAGATTAATGGCACAACATCTGAAACCACAGATACCATCTTAAGCTCCCAATCAGAGGAAAGCCCTGGTGCTAGAAAGGGGCCTCCAGTGGCTCCGAAGCCTACCTGGGTACGCCAAAGCCTCAGAAGCATTAAATCTGGGAAGTCGCCAGCAGAGGCTTTTAAACATCCAGACAAAAGGAGCCAAGACACGGGAAGGACCTTCGGCGTTAGTCTGAGAGCCACTTCGTCGGCAacgaatcaatcaatcaaacaaaagATCAGCTCTTTTGAGACCTTCTCTAACTCTGATGGAGGAGACAAACACGAGAGGACCAGCAGAAGACTAGCAGCATCATCTTCATCTCTTCCTCCAGCGGAGAAAAGCCAGCCTAGGTTTGAGAGGACGCAGCCTGCAGAAACCAACAGTTTTATCAAGAGACAGGACTGTGAGAAACCTTCTGAGCCAGACACTTCAGAGCCATGCCCCATCACTGAAACATCTTCAGAAGCAGAGCAACCAACCTCAGATGAAAAATCAGATGTTATCCCTGAGACAAATGATCTGAATGAGGTTGAAGAACCCTCTGAAGATCCTACAAGCCCTCCAGAAGAGAGTACATCACCTGCCAAGGAAGAGGACGAAGCAAGTCCTCCTGAGAAGGACTTGCCTTCGATTGGACACTCGCCGAGAAGATCCAGCAGTTCCAAAGATCCACCTTCAGTGAAGACCTCAACATTGGAAGGTCAAGAAGATCAAAGAAGGACATCCGCAAGCCTAAGAACCAGGAGTCTACCTTTGAACACCAACCCACCTACTGATGCCCACAACCAAGGTGGTCTTGACGGGGATAGTCTTGAGATCATTCTGTCGTTCAGCAACCAGGTGTCCAATGCCTTGATGCGCTCTATGCAGTCCCTTCCCCAGTCACCATGCCTAAAATTGGGAAACCCCTGGAGCGCCCCACCTGGATCTTCTCACTCAAACCCCTCTGAAGACGAGACTCCACTATCTCCTGTACCAGACAGTAACGAAAAGGGATTCTCTGTGAGCCTGGCTGAGCTGAGAGAGCGCACTAttgagagaggagaagagagtgaaaaagatgAGGGTAAACCTGAACGACCCCTCACCACACCCTCTGCAGTGTGTGCCCAGTCTGTGATATCAGCTCTTCCTTCACAAGAGATCCAGCGCATGATCCAGGAAGTCAAGGATCTTGATGAGGACACCCTAAGGCAACTGGAAGACATCCACGTAGTGATTCTTCACAAGGAGGAGGGAGCTGGCTTGGGTTTCAGTATTGCTGGTGGAATCGATCTGGAGAACAAAGCGACTACAGTTCACCGGGTTTTCCCCCAAGGCCTAGCGGCTCAGGAAGGCACCATTGAGAAAGGAGACGAAGTTCTGTCCATCAACGGACAGACCCTGAAGAACGTGAAGCACAGCGACGCGACAGCAGCACTCCGTCAAGCACGCGACTTGAAACaggcggtggtggtggtgtgcaAGAGTAAGGAAGCAGGAGCCAGCGGAAGCAGTAGCGCTAACGCTAACGACTCCAGCTGTAGCAGCGGCACAGAGCAGAGCTTCACAGCAGATGAAGGTGGTGAAGTTCTGAATCTGGAGTTGGAGAAGAATGCAGGTGGTGTTGGGTTTAGTCTGGAAGGAGGAAAAGGCTCTATTCATGGAGACAAACCTCTGGTCGTTAACAGAATCTTCACAGgcaGTACAGCTGAAGAGAAAGGTCTGCAGGTTGGTGATGAGCTGCTGCAGGTCCAGAGCTCCGTCCTTCAAGGCCTTGCAAGGTTCGAAGCCTGGAGTCTCATCAAAGGCCTTCCTGAGGGTCCATTCACAGCCATCGtcaggagaaagaaagaggaacaGACCTAATTCCATAACTGAAGTACTGTAAACAGCCCCCCCAAAGAGATAACAATTAGCACCTAGATTAAGACTTGATTAGGTCTTAAACTACAGTATTGAACaacagatttaatttaatattacatttaatcatttagaTAAATGTATATAGCAGATTTCAATCACCCAGTGATGTTTACAGCGGACAGAAgcacaaatgtaatgtaacatacaATAATAATGGTGTGTTTAGTCTTAAGACTAAGCTCAGTCTGCTTCTCTCAAAAGGACATTTGTGCTTTTTTCCATCATGTTATGTTTTCATTAATGTAACATCtgcttttattacagttttcacaGTTAGTTAGATAACTTCAGCCAAAAGTCAAGTTTGTCCAATAGGAAAGAAGCTAAGGGACATTTCTGCAAGACATTCTCCACTTTGGACATATTTCTACTGagaaataaatttatataaatctaAAAAACCTGCTAGGCATTTTATATAATTCAATCTAAGATTAATACACATCCTGAAAGCCACAGTAAAAAGTGCTACACTGAATTTACTgtgccaaaagttatgggatATGGTAaatgcagtatgtaaattgttcATGAAGTAATACATTAGAGAACAGCTTGGAAACGTCCACATCTGTTTCTGTATGTTTGAAGCTGGTCAGCATGTTCATGGGAAGGttatgtgaattatgggagttttcAGAGTTGTGGcgggcatttaacattctttaATCCATTCGATCTCCTGTGATCGAGATCCTACAGCGTCTGGCAAGAATTGTCCATGAAAAAAGACAAGCAAAAGTCACATTCACATTAATGCAGCATGAATGAGGCCCCACACAcgtatcccacaggtcagttcAGCATTTTTTTAGCAGCGATTTTTGTTGGTACTCATTTCAGCAGAATGATGCTTGTAGACAATGCAATGCAATCTTCACAAAGTTACTTCACATACTTGTGTTTGGTAAAATCGTCCTATTAAAAGATGACGTTTCTCCCAAGCTTTTTTCTCCTGCAGTATCTTCCTATGTTTTGTACCATCCATGTATCTGTTCTTTAATTTTAACTAGATGCCCAGTAATActgataaaattatatatatatataggcttcTTTATTTCAATGCtatcaccaccatgcttcactttgaggagtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54213 lncRNA upstream 7535 3661700 ~ 3683184 (+) False tlnrd1
TU54216 lncRNA upstream 33666 3655710 ~ 3657053 (+) True G40187
TU54214 lncRNA upstream 35337 3654800 ~ 3655382 (+) True G40186
TU54129 lncRNA upstream 203546 3399516 ~ 3487173 (+) True G40112
TU54233 lncRNA downstream 10077 3760161 ~ 3763427 (+) True G40194
TU54322 lncRNA downstream 87514 3837598 ~ 3837861 (+) False LOC103044341
TU54326 lncRNA downstream 125339 3875423 ~ 3875630 (+) True G40274
TU54327 lncRNA downstream 141548 3891632 ~ 3891893 (+) True G40275
TU54340 lncRNA downstream 150972 3901056 ~ 3933592 (+) True G40287
XM_007258148.3 mRNA upstream 25613 3661675 ~ 3665106 (+) True tlnrd1
XM_022669508.1 mRNA upstream 45031 3429482 ~ 3645688 (+) True cemip
XM_022669509.1 mRNA upstream 45031 3429482 ~ 3645688 (+) False cemip
XM_022670141.1 mRNA upstream 291405 3382679 ~ 3399314 (+) False LOC103025846
XM_022669506.1 mRNA upstream 413106 3123179 ~ 3277613 (+) False arnt2
XM_022670143.1 mRNA downstream 87423 3837507 ~ 3856474 (+) True LOC103044341
XM_022669514.1 mRNA downstream 380538 4130622 ~ 4394295 (+) True LOC103021590
XM_007258141.3 mRNA downstream 684468 4434552 ~ 4490598 (+) True LOC103022507
XM_007258142.3 mRNA downstream 684468 4434552 ~ 4490598 (+) False LOC103022507
XM_022669515.1 mRNA downstream 754313 4504397 ~ 4515385 (+) True LOC103046723
TU53987 other upstream 879223 2689967 ~ 2811496 (+) False LOC103029230
TU53995 other upstream 952502 2735596 ~ 2738217 (+) False LOC103029230
TU53708 other upstream 1904198 1783424 ~ 1786521 (+) False muc2
TU53709 other upstream 1904483 1783424 ~ 1786236 (+) False muc2
TU53710 other upstream 1905626 1781482 ~ 1785093 (+) False muc2
TU54378 other downstream 384426 4134510 ~ 4135585 (+) True G40318
TU54660 other downstream 1558462 5308546 ~ 5310807 (+) False snrpa1
TU54910 other downstream 2783281 6533365 ~ 6533674 (+) True G40756
XR_001518717.2 other downstream 4076439 7826523 ~ 7826914 (+) True LOC107197696
TU55733 other downstream 6245669 9995753 ~ 10005398 (+) False LOC103037553

Expression Profile