RNA id: XM_007260222.3


Basic Information

Item Value
RNA id XM_007260222.3
length 3950
RNA type mRNA
GC content 0.44
exon number 14
gene id clpx
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 1011639 ~ 1036934 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTCCCCTCCAGTCACCTGGGTCGGTGTCCCTCGGAGCAGGCTGACGTTCTCTTTCCTTCAACTCCTGACATTTTCATTTCACCCCAACGGACTAAGGAGGGCAGCAGTGGACCTGCACTAGTTGTTCAACGCTCAGGTCCGCTAGCTTTAGCGAGTTCAGCAGCTAACTGAATGGTGGTGATGGTATACAGCTGGGGAGCAGGTTAGAATATCTGCTGTTTATTATATTCCGGTATTTCACTGCTGAGCTGCTATTTACTCCAGCTGAACTAGAAGAAGTTAGCTAAGGCAGGAAACCATGTCTTGTGCCTGCACCTCAGCAGCGAGACTCTTCATAAACTCAGCTCATAAAGGAATACATGGATCAAGAGTACAGCTGTTTTCTCTTAGCCGAACAGGATCTCATGAAATTCGTTTGACCCATAAAGTCCCTGTGAGATCTTTCTCAGAGACCTGTGTGTACTATGCATCCAAGGATGGGATGAAGGATGGAGATGGTGGAAAGAAATCTGTCGGTGAAGGAAGTGGAAAAAGATCCAGTTCTGGTGCTTCAGGGAAAGGCGGTAGTCAGCTTCGTTGCCCTAAATGCGGAGATCCCTGCACACACGTGGAAACATTTGTCTCCTCAACTAGGTTTGTCAAATGTGAAAAATGCCATCACTTTTTCGTGGTGCTGTCAGAAACTGACACTAAGAAGAGTCTGAGTAAAGATCCTGAATCAGCTGCTGAAGCTATGAAGCTGGCCTTCCAACAGAAACCACCCCCTCCTCCTAAGAAGaTCTATGCCTACCTGGACAAATATGTTGTGGGCCAGGCCCACGCAAAGAAGGTGCTTTCAGTGGCTGTGTACAATCACTACAAGCGCATTTATAACAACATGCCAGCAGGCTCCAGACAGCAGCAGGTGGAGGTGGAGAAGCAGGGCTCTCTCACACCCAGAGAGCTAGAGCTAAGACGTCGGGAGGATGAGTACAGATTCACAAAGCTGCTGCAGATCGCAGGGATCAGCCCCCATGGTAGCGCCTTGGGAGCCTCCATGCAGCAGCAGGTGAACCAGCAGCCTCCTCAGGAacggagaggaggagaggtgCTGGACTCCAACCACACCGACATCAAACTGGAGAAGAGCAATATCGTACTGCTGGGCCCCACCGGCTCTGGAAAAACCCTTTTGGCCCAAACTTTAGCCAAATGCCTGGATGTCCCTTTTGCGATCTGTGACTGCACTACCCTCACACAGGCTGGATATGTGGGAGAGGATATTGAGTCAGTCATCGCTAAACTACTGCAGGACGCCAACTATGTCATTGAGAAAGCTCAACAGGGCATTGTTTTCTTGGATGAAGTGGACAAAATTGGCAGCGTGCCTGGAATCCATCAGTTAAGAGACGTGGGTGGAGAAGGAGTTCAGCAGGGTTTACTTAAACTCCTGGAAGGCACAATAGTGAATGTTCCTGAGAAAAACACACGCAAGTTAAGGGGTGAGACGGTGCAAGTCGACACTACGAACATCTTGTTTGTTGCTTCTGGTGCTTTTAATGGACTGGATCGCATCATCAGcagaagaaagaatgagaagTACCTGGGCTTTGGTACACCATCTAACCTGGGTAAGGGACGacgggcagcagcagcagccgacGTGGCCAACATCACAGGAGGCGAGGTGGACGCAGTGGCCGAGATCGAGGAGAAAGATCGGCTCCTAAAACTCGTGGAGGCGCGTGACCTGATCGAGTTTGGCATGATCCCGGAATTTGTGGGTCGTCTGCCTGTGGTGGTACCGCTGCACAGCCTGGATGAAGACACACTTGTTCGCATTCTGACTGAACCTCGAAATGCTGTAGTACCACAGTACCAGGCCCTCTTCGGTATGGATAAGTGTGACCTGACTGTAACCCCTGATGCCCTGCGAGCGATTGCCCGAATGGCGCTGGAACGGAAGACAGGTGCTCGAGGGCTTCGCTCTATAATGGAGAAACTGCTGCTGGACCCCATGTTTGAAGTGCCACACTCAGATATTGTAGCTGTGGAGATAAACAGGGAGGTAGTTCATGGAAAAACAGAGCCTCATTACGCAAGAGCACCAGCAAAAGAAGCAGCAGAGGAGGAATATGACTCTGGAATGGAGGAAGAGAACTGGACCAGGCAGGTTGATGCAGCCAAGAATTAAAACCAGCCAACAAAAAAACTTCTTATTTAAGCTCCAAATgatgaatacattttttatttcagtttattaagTAAGTAATGATTCACCATGGGTCCATTTACACACAGACATGTACACACTGATGTATGTAGCCCTGAATGATCTGTACTAATGACTGATTCACCTGTAAGTCACAGTGTGGAGTTTTCACTTATCCTGAATTATACTTATGGACAAATGATTTAGAcgaaaaacatgtttaaaccaAATGTAATCTATGAACTATGCCTCCCAGTGAGTGACTGTTAATagtgaatgtaaaaaaatattttattcctttataaacatgttttgatTTTTATGAGCTGTTTGCTTTCATTGGTTTGAATGGAGATAAGAGGATAAAGATCACATCTTCCTCTATGTTCTAATGTTGAATAACcgttttctttttctgctcagagtgttataatatataaaaaacgtTCTGGACACAATGTTCCACTCTACAGTGTAAATCTGTTGAGATTTATCCACTGAGGTActtgttttgtttcattataCTCCTTTAGCTTTTACTTGACAGGGAAACTCCTCATGAAATCTGAGTGAGCATATTTCTTCTTAACAAAACAACTTTGTAATATAGTTTTATAGTCCTCTATTTATCTGCTGCTGTCTGTATTACCCTTCATGCTGCATTAGTTTTGTGCATGGGTTTGTTTGTCTTTTAATGGACTGGTTTAGAACAATAACTGTTCCAGAACGCTGCTGATTGGTTGGTCCTTAAGGAGCTTAAACATGAGCATAGTCTTGTTACTCTAACCTGTTAGACCAAGGTTCTTCAGATCTGGTCTTGGAGGGCTGATACACTGATGTCCAGTCCTGCTCAAACACACCTACTAACACTGGCAGATAAAAGACGAGTAGAATGAGGGATATCACAAACCATACTGGACCCTCCTGAAATGGAATTATAAGCTGCTTCATTAGCTAGATTTCCCATCAGTATTCTTTGAGAATTCCTCCAATTACGCACCTTGTATCTCTCGCTGCTCACATTTTCCTCTTTCACATTGCATGTTGTGTAATTCACATCCCACTTTTGTGAATTACACAACACTCATCTCTCCTGACTGGGAAACCTTCTCTTAAGATATGTTTTTAATAGGTGTAGCTTTTTCTGTGTAGACTGATTTTCTGTGTATACGCACCATCATGGATTGTCTGAGtcagattggtttattttaaaccTCTGATAACATTCAAGAACAGAAAGAACAGatcaaactgattaaaaacctctTCAAAAAACCTGCACAGATTCTGTAGTAAGATGAAACCAAGATAAGCTTGAGTAGGAAGAAGCACAAGATAGGTTgaagtcaaacatggtggaggcactGTTTTTGAATGTGTTCAAATGGACTGACAAATTGTGACAGACTTTTTAAAGAACTTAAACTATTTTACAGCTGGGATCATGTGTACAGATTTTTCAGAAAAATCTTTGATCTAGGATCACCTCCCATTTTTGCTCTAATCATTATGATATTTACTaaagctgcacaatatattgtttgcTAATTGTGTACTTtcaatacataatataatacaatatcaGCAATTTGGTTATTATGTGCAGCCTGGTGGTGATCTTTTTTGTTTCAGAATTGATTTATTGGTCCTAGATCAACGTATTTATTCTGGGATGCTAAGCAGACAGATCCCATTCCTCTGTTCTTTTGTAGGCTTTCTTGTAAAATGATATGGGTTAATAAAGCTGTCCTTAACTCTC

Function

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K03544 clpX, CLPX; ATP-dependent Clp protease ATP-binding subunit ClpX

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53256 lncRNA upstream 44311 964928 ~ 967328 (+) True G39539
TU53243 lncRNA upstream 131743 879685 ~ 879896 (+) True G39529
TU53225 lncRNA upstream 244025 767338 ~ 767614 (+) True G39512
TU53223 lncRNA upstream 257802 750822 ~ 753837 (+) True G39511
TU53218 lncRNA upstream 261019 745568 ~ 750620 (+) False G39506
TU53274 lncRNA downstream 7174 1044108 ~ 1045342 (+) False pdcd7
XR_002649915.1 lncRNA downstream 116610 1153544 ~ 1159078 (+) True LOC111192491
TU53349 lncRNA downstream 116682 1153616 ~ 1159066 (+) False LOC111192491
TU53366 lncRNA downstream 148638 1185572 ~ 1186479 (+) True G39616
TU53377 lncRNA downstream 172348 1209282 ~ 1209733 (+) True G39621
XM_022669475.1 mRNA upstream 11355 974937 ~ 1000284 (+) True ankdd1a
XM_007260221.3 mRNA upstream 48355 922757 ~ 963284 (+) True plekho2
XM_007239783.3 mRNA upstream 330017 671881 ~ 681622 (+) False immp1l
XM_007239784.2 mRNA upstream 330017 672073 ~ 681622 (+) False immp1l
XM_022669474.1 mRNA upstream 330017 675749 ~ 681622 (+) True immp1l
XM_022670130.1 mRNA downstream 1639 1038573 ~ 1045347 (+) True pdcd7
XM_007260225.3 mRNA downstream 11310 1048244 ~ 1071616 (+) True ubap1l
XM_007260226.2 mRNA downstream 45617 1082551 ~ 1092167 (+) True rasl12
XM_007260228.3 mRNA downstream 86409 1123343 ~ 1153288 (+) True LOC103024602
XM_022669478.1 mRNA downstream 122838 1159772 ~ 1194746 (+) True ap2a2
XR_455709.3 other upstream 48355 922757 ~ 963284 (+) False plekho2
XR_002649913.1 other upstream 720617 281585 ~ 291022 (+) False commd2
TU53369 other downstream 169853 1206787 ~ 1209096 (+) True G39619
TU53383 other downstream 182872 1219806 ~ 1220486 (+) True G39626
TU53498 other downstream 373512 1410446 ~ 1413799 (+) False LOC111192494
TU53707 other downstream 742757 1779691 ~ 1782660 (+) False muc2
TU53710 other downstream 744548 1781482 ~ 1785093 (+) False muc2

Expression Profile