RNA id: XM_007260225.3


Basic Information

Item Value
RNA id XM_007260225.3
length 1806
RNA type mRNA
GC content 0.50
exon number 6
gene id ubap1l
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 1048244 ~ 1071616 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCTTATCTGTGTAAGCAGGTGTCTTCTAGTCTTAAGACCGACCCGGCggcaacatcacacacactcatcctcAGCCCttggagcacacacacacacacacacacacacactccggaAACACAGATCAGCGACAGTGAGAATGGCGTGCCTGAATGAGGTGCACTTTAAACTCCCACTGGGCTCCCTGGAGGAGGTCAAAGAGGAGGTGGAAGCCGTCACAGCTCCGGAAATCACAGCGCCAGACTACCTGAAGGTCCTGCAGGAGACAGAGTATGCATTTAGTCTGGAGAACTGGGTTCTGACGGGCCTGCAGAGCGGCTACAGCACTGACCCTTCTGCAACAGTTCCCACGTCCCCCTCCGGGATGTGTCCTACCTGTCCCCCGTACTGGATGATGTTCAGCAGTCCTCAGGAGAGCAGGCTAGCCAGCCGCTGGAGCAGCGACTTCTGGGAACCCAACCCTCGACCCCGCAGCCGCAGCCTGAACGCTGCCCACTACCGAGCCATGAAAGACCAGGTGAAGTTTACCATTTCCGACTCGGACGAAGACGACTTCTCTGATAATGAAGAGGCTACATTTCCAGGCAACGAAGGAACAAAATGCAGCCCGCCAAGCTTAACAAGACAAGGGCCAGGGGTGAAAGACCTGCAGTCTCGCTGCTCCTCAAACTTCCTCAACCTGCCTTCATCCTGCGGCCTCTCAGCTCAGAGGCATGTCAGATTCAGACAAGCCTCAGTTTCAGACTCCAGATCTACAGGAAGTTCCTACAGGAGAAACCAAAGTACAGACCACAGTGGCTCACATATGCCTTCCCAGTTTGCCTCACAGTCTCCAGGCCTGGCCCTGGCCCTCTCGCGGCCGCTGGGTTCCCACGCTGCTCCCCTGGACTCCTCGGCAGAGCTGCTCTCGGCCCTTAGCCCCGAAGAACGGCAGCTGCTGGAAGCGGTGATGGAACGCGGCTACCCACTGCGTACGGCCATCATCGCCCTGCAGAAGACCGGCCAGAGCAGCCCAGAGCAGATCCTGAGTTACTTGGTTGCATGTGACCGGCTGTGTGAGCTTGGCTATGATGAAGCTCAAGTGGAGGAAGCTCTGGAGATGTTCCAGAACTGCGAGACAAAGGCTGAGGAGTTTCTTCACCTGCTCACACAGTTTCATGAGATGGGCTTCCAGCAAAACGCCATTAAAGAGGTGCTGCTCGTGCACGAAAACCACCGTGAGCGCGCCCTGGAGGAGCTCATGATGCGTGTTGCGTGACCAGATCCCTGTATCTAGAGAAATGGCTTACAACCAAGATTCCCTATCTCAGTTCTTCAtccagcacacctgattcagctCATTCTCCATTTCACAAGCtgtcctgtgattggtcaggtTTAGTGTAGAaatcaaaacatgcaaaatgtgctgaaaagaaaagaaaaagtgctTGGGGGTCCCAGGGCAGATGTTGGAAACCCTTGGCTTTCAGTAATCAGTGAGAACTGTGGCCTTGATGGGAAAGCAAAGCTTTCAGTGCAACTTGTACAGTGGAAATACGCATACAGAGGACATTTAGCTATATTGATTATTCTAGTTGACTTAATTATCAATTAAAGTTTATGACTTTGCATTAAACATGCATTCTTAAACTGTCATAACTTAGAAATCTGTCAAAATGTTATAAATCTTTGTTTACATGTTGACTGAACCTGTTCACATTGTATTTAAGGAATGTTTGTATTAAATGAACTCTGTAATGTATAATGTCTGATTTGtgatttagtgtttagtgttttttttttcaataaatgaGCTTTTCATGa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53274 lncRNA upstream 2902 1044108 ~ 1045342 (+) False pdcd7
TU53256 lncRNA upstream 80916 964928 ~ 967328 (+) True G39539
TU53243 lncRNA upstream 168348 879685 ~ 879896 (+) True G39529
TU53225 lncRNA upstream 280630 767338 ~ 767614 (+) True G39512
TU53223 lncRNA upstream 294407 750822 ~ 753837 (+) True G39511
XR_002649915.1 lncRNA downstream 81928 1153544 ~ 1159078 (+) True LOC111192491
TU53349 lncRNA downstream 82000 1153616 ~ 1159066 (+) False LOC111192491
TU53366 lncRNA downstream 113956 1185572 ~ 1186479 (+) True G39616
TU53377 lncRNA downstream 137666 1209282 ~ 1209733 (+) True G39621
TU53378 lncRNA downstream 138348 1209964 ~ 1214713 (+) True G39622
XM_022670130.1 mRNA upstream 2897 1038573 ~ 1045347 (+) True pdcd7
XM_007260222.3 mRNA upstream 11310 1011639 ~ 1036934 (+) True clpx
XM_007260223.3 mRNA upstream 11310 1011639 ~ 1036934 (+) False clpx
XM_022669475.1 mRNA upstream 47960 974937 ~ 1000284 (+) True ankdd1a
XM_007260221.3 mRNA upstream 84960 922757 ~ 963284 (+) True plekho2
XM_007260226.2 mRNA downstream 10935 1082551 ~ 1092167 (+) True rasl12
XM_007260228.3 mRNA downstream 51727 1123343 ~ 1153288 (+) True LOC103024602
XM_022669478.1 mRNA downstream 88156 1159772 ~ 1194746 (+) True ap2a2
XM_022669479.1 mRNA downstream 88157 1159773 ~ 1194746 (+) False ap2a2
XM_022669483.1 mRNA downstream 194241 1265857 ~ 1268376 (+) True LOC111192492
XR_455709.3 other upstream 84960 922757 ~ 963284 (+) False plekho2
XR_002649913.1 other upstream 757222 281585 ~ 291022 (+) False commd2
TU53369 other downstream 135171 1206787 ~ 1209096 (+) True G39619
TU53383 other downstream 148190 1219806 ~ 1220486 (+) True G39626
TU53498 other downstream 338830 1410446 ~ 1413799 (+) False LOC111192494
TU53707 other downstream 708075 1779691 ~ 1782660 (+) False muc2
TU53710 other downstream 709866 1781482 ~ 1785093 (+) False muc2

Expression Profile