RNA id: XM_007260226.2


Basic Information

Item Value
RNA id XM_007260226.2
length 1414
RNA type mRNA
GC content 0.53
exon number 5
gene id rasl12
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 1082551 ~ 1092167 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGAGCAGTGATCTAGGGTCAGAATCTTCAGGATGGGGGGAGGGTCTGTATCCACACTGCCACGCCCACACGAGCTTCAGCATCCATccacacacataccacagcTCAACTTCCAGTGAGTGAAGTTCTCAGCTTCAGGATCCCCACTGTCCACTGTTCCCCCACAGCATGAGCTGTTCGGCCAGATAGTCTTCTACAACAGCCTGGAGGAACTCCTGGAGTCCTGCACGAGCCTGCGTGAGACTGAGAGATGGCGCGCGGTGGAAGAACCTGTAGAGTATCCAGCTGGACTGCAGGAGAAATCTCCCGGAGCTCCTCAGGCAGATGTTCCTGCAGGAGGCAGGCGGAGAGGAGCTGCTGAGGATCAGCTCGCGCTGCAGTGGAGACCCGGATCAGGATGGCTCTGATGTTTGGGAAAGCGAGAACGTGCAATATCGTGACAGTTCCAGAGCACGAGCCTGCAGAGTGTAATGTGGTGGTGCTGGGAGCTCTGGGCTCTGGTAAATCAGCCCTGACTGTGAAGTTCCTCACAAAGCGCTTCATTAGCGAATATGATCCAAATCTCGAGGACACTTATTCTTCTGAGGAGCTTGTGGACCAGCAGCCAGTTCTGGTCAAAGTGATGGACACAGCTGACCAGGATGGACCAGTGAACTGTGAGCGCTACCTGGGCTGGGCCAGTGCATTTCTCATCGTCTACAGTATAGATAACAGATACAGCTTTGAGGTGTGTCAGCAGTATCTGGAGACTGTGACGCTGTACACTAAAGGCCTGCAGCCTGAGGCTCCAGTCATTCTACTGGGCAACAAAGTGGACATGGAAAGATACAGgcagGTCAGTAAGTCGGATGGAGCGTCTCTGGCTGCTCGGTTCAGCTGCTTGTTTTTCGAGGTGTCTGCCTGCCTGGACTTCTTGTCAGTTCAGCATGTTTTTCATGATGCGGTTCGGGAGGTCCGGCGTGAGGCTGAGAGGAGTCTAGGGGTCCGGCCTCTCTTCATCAGCGAGGACAGACCCACCATCAGCCTCTCTGCACCCCCTCCTCTCCTGCCCTGCTATAAGGAGCTGCCCACCCCAGCCACTGCCAAGCTGGTGACGGTCAAATCCTCCAGAGCCCAGAGCAAACGCAGAGCCCCCACGCTCACCCTGCTGAAGGGCTTCAAAATCTTCTGACTCAGTGCTGCCCCCTGCTGGCAATGAAGCACACATGTTGTATTCAGTTATGAAACCACAAAACACAACATGGACTGGTTTGGGCTTGAGTTGAGCTGTGATGCTTCAGCAGGCAAGTTGAAGTTAAACAGTTAAAGGAGATCTCTGAAGAGGTGAAAAGGACTTGggctgtagtgaaacatgaaatcaagtatgaacttttgttgaatatcccagcattctgaaatacagcgatTTAACAGGG

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07854 RASL12, RIS; Ras-like protein family member 12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53274 lncRNA upstream 37209 1044108 ~ 1045342 (+) False pdcd7
TU53256 lncRNA upstream 115223 964928 ~ 967328 (+) True G39539
TU53243 lncRNA upstream 202655 879685 ~ 879896 (+) True G39529
TU53225 lncRNA upstream 314937 767338 ~ 767614 (+) True G39512
TU53223 lncRNA upstream 328714 750822 ~ 753837 (+) True G39511
XR_002649915.1 lncRNA downstream 61377 1153544 ~ 1159078 (+) True LOC111192491
TU53349 lncRNA downstream 61449 1153616 ~ 1159066 (+) False LOC111192491
TU53366 lncRNA downstream 93405 1185572 ~ 1186479 (+) True G39616
TU53377 lncRNA downstream 117115 1209282 ~ 1209733 (+) True G39621
TU53378 lncRNA downstream 117797 1209964 ~ 1214713 (+) True G39622
XM_007260225.3 mRNA upstream 10935 1048244 ~ 1071616 (+) True ubap1l
XM_022670130.1 mRNA upstream 37204 1038573 ~ 1045347 (+) True pdcd7
XM_007260222.3 mRNA upstream 45617 1011639 ~ 1036934 (+) True clpx
XM_007260223.3 mRNA upstream 45617 1011639 ~ 1036934 (+) False clpx
XM_022669475.1 mRNA upstream 82267 974937 ~ 1000284 (+) True ankdd1a
XM_007260228.3 mRNA downstream 31176 1123343 ~ 1153288 (+) True LOC103024602
XM_022669478.1 mRNA downstream 67605 1159772 ~ 1194746 (+) True ap2a2
XM_022669479.1 mRNA downstream 67606 1159773 ~ 1194746 (+) False ap2a2
XM_022669483.1 mRNA downstream 173690 1265857 ~ 1268376 (+) True LOC111192492
XM_022669482.1 mRNA downstream 174457 1266624 ~ 1268376 (+) False LOC111192492
XR_455709.3 other upstream 119267 922757 ~ 963284 (+) False plekho2
XR_002649913.1 other upstream 791529 281585 ~ 291022 (+) False commd2
TU53369 other downstream 114620 1206787 ~ 1209096 (+) True G39619
TU53383 other downstream 127639 1219806 ~ 1220486 (+) True G39626
TU53498 other downstream 318279 1410446 ~ 1413799 (+) False LOC111192494
TU53707 other downstream 687524 1779691 ~ 1782660 (+) False muc2
TU53710 other downstream 689315 1781482 ~ 1785093 (+) False muc2

Expression Profile