RNA id: XM_007260228.3


Basic Information

Item Value
RNA id XM_007260228.3
length 4099
RNA type mRNA
GC content 0.44
exon number 12
gene id LOC103024602
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 1123343 ~ 1153288 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGTGGGAGAgtggaggagggagggagaagCTGCTAGAAGGGAAGGGCGGAtaataatgctgctgctgcttctgctgtagCGAACAGGCAGGTTCATTAATGGAAAGGTACAGAGACAGCTGAGATATACCTGTATGTGGGGAGAGGATCCGCTGGGGAAAGCCTCGCTGGAACAGTTTGGACCGAAACACTGTGACCAAAACCCCCGCAAGTGCGACTTCTTAGTCCAAGCACAAGAGATTACATTCTAGAAGTCAACTGAAGCAACAAAGCCAGCCATGTCAACTCACGATTCAGAGGTGTACACGGTGGCACCGGAGATGCCAGCCATGTTTGATGGGATGAAGCTGGCGGCCGTTGCCACCATCCTCTACGTCGTCGTCCGGTGCCTCAACCTGAAAAGCCCCACAGCCCCTCCAGACCTCACCTACCAGGACACAGCGCTCAACCGCTTCCTGCTAAAGTCCTGCCCCCATCTGACCAAAGAATACATTCCTCCTTTGTTGTGGGGAAAAAGTGGCCATTTGCAGACTGCCCTGTACGGCAAGCTGGGCAGGGTCAGTTCACCCCATCCGAAAGGCCAACGCAAGTATCTGCCTATGCAGGATGGCGCCACATCGACTTTTGACCTCTTTGAGCCTTTGGCGGATCATCAGAGCGGAGCTGACATCACAATGGTGATTTGTCCGGGGATCGGGAACCACAGCGAGAAGCACTACATCCGCACGTTCGTGGATTACTCGCAGAAACAAGGCTACCGCTGTGCTGTGCTCAACCACCTTGGGGCCTTGCCAAACATCGAGCTCACCTCTCCCCGCATGTTCACCTATGGCTGTACATGGGAGTTCGCATCCATGGTCGGCTACATCAAGAAGATGTATCCCCAGACCCAGCTGATCGTGGTGGGTTTCAGCCTTGGGGGCAACATCGTCTGCAAGTTCCTGGGAGAGAACCGTGCCAACCAGGAGCGAGTGCTGTGCTGTGTGAGCGTCTGTCAGGGCTACAGTGCACTCAGGGCTCAGGAGACCTTCCTGCAGTGGGACCAGTGCCGGCGCTTTTATAACTTCCTCATGGCAGACAACATGAAGAAGATCATCCTGTCCCACAGGGGTAGCCTGTTTGGGGGAGGTTCTCCAAAGATGGCCGATGCGGATCTGAGACGCCTCTACACCGCCACATCCCTCATGCAGATTGACGACAACATCATGAGaAAATTCCATGGCCACAATTCCTTAAAAGAGTACTATGAGAAAGAAAGCTGTGTCCATTTCATTCACAACGTCAATGTTCCACTGTTGCTGGTGAACTCTGCTGATGATCCTCTCGTTCACGGCTCTTTACTCACCATTCCTCGCACCCTTGCAGaaaagaaagagaatgtcGTTTTTGCCCTCACGTTGCACGGCGGGCACCTGGGCTTCTTCGAGGGTGCTGTTCTGTTTCCTCAGCCTCTTACCTGGATGGACAAGGTCATCGTGGGTTACGCCAACGCCATGTGTCAGTGGGAGAAGCAGAAGCCAGCGTGCAAAAGCCAGGGCGCtcacaacacagagaccaaatGCTCGGACAGTACATCTTAACCTTTCACCTCCTTCACTCCATGACCGCTCgccctccatacacacacacatatatacatacatatacaaacacatacataccaTTCTGACCACTCTAACCTACCACAAGTCagtcacaacacacacacacgtgctttttaaaaaaaaggacgAGTAGGTAGCCTTTCCAGAGCAAGAAAAACGACAGGGAAAAAAGCGTAATGACCAAAAAACGAGCAGACTCATGCCGAGCGCTGGGTACACAGTAGTACACAGTCTGTAGTCCAGATTAGATACGTAGATTCACACGGACTCTTGATTAGCGATTATTGTGCTACATATAGGAGAGAAAAGGACGCTCAGCAACTCGCAGCTGCTTGTGTGGAAATGCTTCATTACAAGCAGCTGCTGTGGACCATCACATCACACCTCTCTGTACTCTGTATTTAACCAGCGTAGAACGGCGGTTATGCAGGCACTGTGTGCTTATAGCTAGAACAGACATGCTGCTGGTTTGCCTCTTCTGTTGGGTACTTCGTTCTTCATAGTTCGCTGCTGTTAAACGTGCTCTCCGGTCAGACCCTGTCAGATTTTTCATTGCTCTTTGAATTGCACAATTGTTAAAGAACAAACACACCACCAACAGATTCTGTCAACTCAACTGGTGGAACTGATTCCAACTTTATTTAGATTCCTCCGTTTGATGAcatccttaatttttttttcatatatatgttaatgttttaattaaaaggaCACTTCAGTGTTTTCAGTCTGAAAAATCAATCTCCATCTGCTGCATCTGTAGCTTTGGATTGACTACCAGAAGCATGAAGGGGAAAAAAGACACAGTTAAAGCCAACTGAAAGCTGAAAGATTTTTTAGCTGctgatattttttctaatttctgtatattttgttcACCTTTATTGTTGAGGTGGTGagtgtaaaagaaaagaaaaactgctACAGTGGTTTGACCCTGAGGATTGAcactttgttttaaatatttaaaagatttaaagatttaaaatttGGCCTACAgtgtatttgttaaaaaatacattcagaCTGCAAAGAATGCAACAACAGTCATTGAGCaacaaattagaaaaataaaaaatgcagccCCTTGCGCAACAAAGTAGTCAGTCCATCCCTTTTCTTAATGGTAATTATTATATAGAAATTCCCACACACTACAATTACATACTACCAATTGTGTCCATTGGGTTTGGATAGAAAATAAAATGGCTATATTAAGAAATTCAGctatttcacaccaaaccctgcttagctgcAGCAGAGCTGCTCAAGCTATCGAAACAGAATACTGGATTGGACTTTTTGTTTTCTGGAGTTGCAGCAGATGGAAACTAGGTTGAAAAAAACTTGAGTGCTcctttataatattaaaagcactttatattattttatttgccaTATTCATTGACTAATTAGCAGAGATTTGAAGATTAAACCAGAGACTAGTTGAGAAAAGTATATAATGCAACAAGAGAACTAAATGGAGGAAGGAGAGATGTTCACACTAAGTGACTAAATGACTCTATGATCCCTTATGTTCACCAAAGCCTGttgcgtttcttttttttatgtataaaaaaagagtagccaTGTAGTTCACTGTTTGGGACATTTGTCTCTGTCTCAGCATGTCTTGGACACCTATGAATGTGTCTTAGGTTGTTGAGCACTGTTGATAACGCCGTTCTGATCTGCAGTTGTTTGGTTAAGAGTTTGGTTGTGGAGCTGTAGGTCCAGCAGGAGACGTCAGTGCACATGTTTTGAACTTTGCGTCTGTGAAAGCTGGCTTGTTTGGTTAAACTCTGTTCACTCTGTACAGTGTGCTCGAGGATCAGGCTGGATGTTTGTCTGGGTGTCCGTTTTGTGTTGCAGTAGATGTGAGATGAAGTGTCTTGGTTTGCAGCGCCCCCTGCTGCCAGATTTTGTATTTgatttgaaaagaaaaaggacATTTGTAGATGAACAGGAACAGTCAagggaagtaaaaaaaaaaaggcaaagctACAGTCTTACCTTAATAAAGGTGATTCAGATGTTTCTTTGAGTGATGCTATAGAAGAACTGCTTCTAATCCATTTCAAGTTTGAAGTACCTTCGAAACGTCTGAAGCATCTTCACTTAACGTTCCTGAAAGTTCTTTAGCAGCTTAAAAGTTTTTTCACACTTAAGACTTTTATGGATCACTTGTGGTAAACATGTGAAGCACTTTTAAGAGTGTAAGATGGAGAGAACAGTACAGAAAAGCAGTTTTGGGACACTGTGGATAACAAGCTTTTGCTGGAGTATCTGTTCAAACATTTATAGGAATTATTTGGctataacaaacaaaaacaaaccaaaaaacaatataaaataaataaatggacactaatttattttattaatgttctaaaaaatattgtttcatGAAAGTAATTTACATTGATTTCTTTGTAACTGGGATCcactgaaataaaatcaaacaaccaaacaaataaaaaattttttgcactggtt

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K13697 ABHD2; abhydrolase domain-containing protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53274 lncRNA upstream 78001 1044108 ~ 1045342 (+) False pdcd7
TU53256 lncRNA upstream 156015 964928 ~ 967328 (+) True G39539
TU53243 lncRNA upstream 243447 879685 ~ 879896 (+) True G39529
TU53225 lncRNA upstream 355729 767338 ~ 767614 (+) True G39512
TU53223 lncRNA upstream 369506 750822 ~ 753837 (+) True G39511
XR_002649915.1 lncRNA downstream 256 1153544 ~ 1159078 (+) True LOC111192491
TU53349 lncRNA downstream 328 1153616 ~ 1159066 (+) False LOC111192491
TU53366 lncRNA downstream 32284 1185572 ~ 1186479 (+) True G39616
TU53377 lncRNA downstream 55994 1209282 ~ 1209733 (+) True G39621
TU53378 lncRNA downstream 56676 1209964 ~ 1214713 (+) True G39622
XM_007260226.2 mRNA upstream 31176 1082551 ~ 1092167 (+) True rasl12
XM_007260225.3 mRNA upstream 51727 1048244 ~ 1071616 (+) True ubap1l
XM_022670130.1 mRNA upstream 77996 1038573 ~ 1045347 (+) True pdcd7
XM_007260222.3 mRNA upstream 86409 1011639 ~ 1036934 (+) True clpx
XM_007260223.3 mRNA upstream 86409 1011639 ~ 1036934 (+) False clpx
XM_022669478.1 mRNA downstream 6484 1159772 ~ 1194746 (+) True ap2a2
XM_022669479.1 mRNA downstream 6485 1159773 ~ 1194746 (+) False ap2a2
XM_022669483.1 mRNA downstream 112569 1265857 ~ 1268376 (+) True LOC111192492
XM_022669482.1 mRNA downstream 113336 1266624 ~ 1268376 (+) False LOC111192492
XM_022669481.1 mRNA downstream 114577 1267865 ~ 1268376 (+) False LOC111192492
XR_455709.3 other upstream 160059 922757 ~ 963284 (+) False plekho2
XR_002649913.1 other upstream 832321 281585 ~ 291022 (+) False commd2
TU53369 other downstream 53499 1206787 ~ 1209096 (+) True G39619
TU53383 other downstream 66518 1219806 ~ 1220486 (+) True G39626
TU53498 other downstream 257158 1410446 ~ 1413799 (+) False LOC111192494
TU53707 other downstream 626403 1779691 ~ 1782660 (+) False muc2
TU53710 other downstream 628194 1781482 ~ 1785093 (+) False muc2

Expression Profile