RNA id: XM_007260233.3


Basic Information

Item Value
RNA id XM_007260233.3
length 5354
RNA type mRNA
GC content 0.43
exon number 12
gene id LOC103026058
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 1292789 ~ 1306241 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tctcatgcAGCTGTTATAGCTGTTATATTAGTGTTCACAAGTTGCTTATATGATGTTTTAGTTCCACATTAAAAATAGAGTTATAGTCAAGGGTttcaatttgttttctttttgttaaatAATGAAGTTTACAtgcttttctgtgtgtttataggaGTACATGTGGAAGTTCCAACTGATCcaaaacattagcattttttatttacagcagaCATGGGGGATTAACTGTACACCGATGCCAGTGATCCATTTCATCTATCGTAGTGTTTCCTGCTACAGCCTGATGACTTGTTTAGGTTGAGcacttcatattttttttttgttgattgtaCCCACAACTGGTTGGCCACGCTGAAGATATGGAGCTCTCCATGCAGCAGTCACTGAAGAAGAACCAATCTACAGAGATGACCACTAAAATCTCACAATTCCACCATTTCCTGTTTAAACAGTCAAGCCCGGGCTTTCAGTGGGAGTCCCAACCTAACCAAGATGTCAGTCCAGGAGATATGCAAGATCTCCTGACGACCAACCCACACGAGTTCAAACACTGCAAACTTAACATGATAAGACATGACCTAGCACATGCCAAACCTTTTAAAGAGCCAACCCTTTCAATCAGCATTACTGGAAGAGATAATATAGGCAGATCTTTACCTGGTGATGAGGTCTGTGTTCAGATCTTGAGCAGAGAACCTCAGGCAGATGGAGGCAACCTGCTGACAGGGAAGGTTGTAGGACTGATGCATAGAGATGAGGAAAGCTGTAACTTTATCTGTAGGATGGAAGGAAACAAACAGCTTGCGACACCCATCAATAACAACATGACCTGGATATATGTGGttcaaaaaaaagcaaacaaaatagATGTCCGTAAGGTCCAGCCCAACAGTGACCAGTGGGTTACGGACAAATTCATAGATAAAGATGATGATCAGCTATTAGTCGTCAAGGTGCTAAAATGGGAAAAGCATTGTACGTTTCCTCTTGGAGTGGTTACCAAGGTTCTTTCACAGAAGGATTATCTGGATGAAATGTTTCTGAAACTTTCTAAAGGGTTTGGTAAGGAAGACAACCCTACCTTGTCACCTCAACCCAAAGATGATGAAGAACAAGATGATAAAGACAGGCGGgatttttgtgaagaaaaaacatttaccaTTGATCCCAGGGATGCACAAGACTTGGATGATGCCATCAGTGTGATTGACAAAGGAGAAAACTATGAGATTGCTGTCCATATCACAGATGTTGCAAGTTATGTGAGCAAagacagtgaggaggatgaaaCTGCAAAACAGAAAGGCAGAACGATATACACTCGTCCCACCACAGAGGAAAAGGAAACCATATTCATGATCTCCAGGAAGCTGAGCTCTTAGAAACTGAGTTTAATTCCTCATCAGGAACGAAAGACCGTGTCACTGGTGTTAGGTATTAGTAAATCCAACAACACCATATTATcccgctctctcactctctctcgtgTCAGGTCTCAGTTGCGTCTGTCATATGAGAAGGCAGACAGGATCATCCTCGAAAGATGGTCACAGCCTCTGAGCTTCTCTAGTGAAAACGACTGTGTTGTCATTGCCTGTCGTTTTGCCGAAGAGCACAGGAAGGGCAGGTTGGAGGGGGGCTGGAGTTCTGGACAGTGGTCAGAAAAGAGCAGGGCCCAGTGCATGGTGGAGGAGCTAATGAACCTCTACAACAGTGCAGTTGCAGAAATTCTCATCTCAAATGACACAACAAGAGATCTCACCCCACTGAGATGCCACCAGAAACCAGACCATAAAGATTTTGAGGAGTTTAAAGCCAAATATTCTTTTCTTCTCCCCATGTCTCCTTACTTATCACATGTCTGTGAAGTTGAAGGTGTTCAAGAGGTAGATGAACCCACTGAAGTTTGGTCAGGAGAAGATGAAATCATTCAGGAAGAAGATGGTGAGCCACTCATCTTCTTCACATCTGTAATACAAAAAATGAAAGCTCTGGCAGAATCCAGAGACTATCACACACTGGCAAAACTGATCATTTCAGACGACATCCATCCTTCACTGCGTCCAATGGCAAAGGAGTTTCAGGACCTTCAAAAGAAGGCAGAGATTTTGAGATCTTGCACATCCTTGCAGTCAAGGTTGGGACACTTCCAATTGCAACTCAATGCATACACTTGCGCTTCTTCCCCCATGAGACGCTACCTTGACCTGATTCTTCAGAGACTTCTTCACAGTGTGCTCAGAGACGAGAAGGTGGACTACACAAAGTCAGAGATTGATCAGTTCTGTGACTCCAGTGTACAGCAGTTGGACTCTCTAAAAAATTACGACCTCCTAGTTTCAAAATTCAACACTGTTTCTAAATTTCGTTCCACAGTTGTGACCAAACTCGCAGTAGTAGACCAGCTTTCCTTAAGGGAACATAAATTTGAGATTTCACTTCCATTTGAACAAATGTCTGGGGACTTAACCATCATGTACAGACACCTAAAAGTTGTTGAGCAACCAGAGTGCAACCATGACAAGAAATCCATTACACTACACTGGAAGAGAAGAGTGTATTCATTCAGTGATGCTTTAAAAATCAAGCCTCAGTCTAAGTTCAATGAAAATGTGACCCTAATCACAGGTAGTAAGTGGAGACAAATTACATCTGCAGTTAAAGCTGAAGACTGGAAGAAGGTCAGAGTGTGCCttgaacatgtaaaaaaaacagcagcaaataGAAAAGACGAAAGACAGCAGAAAGTGACAAGTTCACAAGAGCACTTCAAGGAGTGTTACATGGAACTCAAGTTAGGAGAAGTGCTGCAAGTGCAGGTTGGGACAGATATCATAGACAGGATGACCACACCAACGGTGAAGCTCCTCTACATCAACCCATTCTTTGAAGTGTGTTTGGAACATGCAAGGAACCCGACCATGTGCTTTTCCAGAGATGTGTGCGACTCATCAAAGTCAGTGTACCAGGATTATAAAGAGTACCAGAAGATCTGGAGAAGGCTGTGTCAGATGGACACGGCTTACAATGCTGTGGAAGAAAATAACAGCGTAATCCTTCAAGATGTGGAAATAACCTGGACCACACAAGACAAGAAGAACGAGGAAAACCTCAAGGGTTTCTTCCAAATGACTCAGACACAGAAGAAAGAATGGCATCTGGAATTTGATCTGACAAACTGCTTTCTTTGTATCCGGTGGAAGGGTCAACATTTGGGGAAAGAggaagtgaaacaaaaaaaacatcacaatgGCTCTGGATTTCCTGACTTGGAGGATCCACTACCAATCACATGGGTCGCTCACGGTGTGGCCTTCAAATCCAAAAAAGAAGAGGACGAAgaggaaaacaataaacaatcaCACAACATCAAAATCCAATTTCAAATAAACCATCAGAGTATGACTGCCAATCCAAAGGAAATCTTTGACACGGGAACCAAGTTCACAGTAGAAGTAATCCCCAAAAAAATTCCATATATGCTAAGAGAAAATGCTGTGGCCAAAATAAAACACGCTAATGATCTGGTGAAAAGCATTGCCATTGGGAACATATCCAATGAACCTCTCAAAAGTGATCACCTACCTTCAGAGGATCACCAGACCCTGACTCTGCCACCGCTGAATAAAAGTCAGAACAGAGCTGTGCAAAAGGCTTTGCAAAATCCCTTCACTGTGATCCAAGGACCACCAGGTACTGGCAAAACTGTGGTTGGGCTTCATATTACCTATCAGTTCTacctgaaaaacaaaacatgccaaaaacacatgccaaaaaaacagaaagaagaacCAAAGAAGCGTGCCATCCTGTACTGCGGGCCCTCCAACAAGGCGGTGGATATTGTGGCAGAACAGCTGATGAACCTCAGAGGAGTCCTTAAACCTCTACGCATTTACTGTGATCAGATGGAGATGCGGGAATTCCCTTACCCTGGCAGTGACCTTAAGCTCTGTCGCAAATCTCTTCGTGATGAAAAGCCCAAGAAAAAACTCAGggACATTACACTGATGTACCTGATACGAGAACCCGAAAACCCTTTCTCGGAGGAGATCAAAGAATttgaaaaaattgaaaatgaacCGGAATTTGACTATGAAAGTTACAGAAAAGTACTGAAGCAGGCTCAGAGTTATGAGCTCAGGAAGCATGATGTTATCCTGTGCACCTGCTCGACTGCACTGAACCCAAACCTCATCAAGACCATGGACTTTCGACAGATCCTCATAGATGAATGCGCCATGGCCACGGAGCCTGAGGCCTTCATCCCACTGGTCTCTCATAAACCTGAGCAGATCGTGCTCCTTGGCGACCATAAGCAGGTTCGGCCAATCGTAGGCTGTGCTCGGGTGAAGGAGCTGGGCATGCAGACCTCTCTGTTTGAACGATATATGAAGGAGGCAGTGATGTTGGACACACAGTACAGAATgCATGAGAGTATCTGTGAGTTTCCCTCTAATGAGTTTTACAATGGCAAGCTGAGAACTGGAGCTCAGCGAGGACCTTGCCGCCTGCTGAACAACAAGAACAATCCGACAGCCATCCTGTTCGCTCACGTCCAGGGAGAGGAGGTCAGTCTGATCGTTTCAACGCCGACCGGCAACGAAAACTCTGTGTCCAATAAACTCGAGGCAGAGCAAGCGGTCCGTGTTGCTGATTTGTTGGTTCGTCAGTCTGGTGTGAAACCAGAAGACATAGCCATCCTGACTCCCTACAATGCACAGGTGTGTACAATCAAACAGCTGctggagaaaaagagtgagaagaGGGAAGACATGCAGGGGGTCACGGTCTGCACCATCATGAAGAGCCAAGggagTGAGTGGCCGTATGTGATAGTCTCCACAGTTCGCTCTTGTCCTCTGTCTGAGATTAAAAGCAGTAAGAACAAAGGGAGGATGGGGAAGAAACTCGGGTTCATTACGGACCCCAACCAGGTCAACGTCGCCATCACACGTGCACAGGATGGACTCTGCATTCTGGGTAATCGTCAGCTGTTGGAGTCCAGCCAGCTCTGGAAGAAACTGGTGTCTCATTATGAAAGACAGAACTGTGTGGTGAATTCAGCTGAAAATATAAAAGTTGACAATGTCAAGCACAGACATTGACTAGTGTACTCATTTCTGTGCTTATGTaaaggaatatatattttgtatctaaccatatatatattttatataatttttttctaatctattttattattcaagGACATAACATGCAGTATTGATCAAATGTTTGTGAGCCCCTTCCATAAAAATACAGCCATCACTGTAACACCTGAGCAAATGCACAAATACAGcttgtagagaagtactgccttCCAATAAAGATGAACCTATTTGCTCCATCCA

Function

GO: NA

KEGG:

id description
ko04740 Olfactory transduction
ko04742 Taste transduction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53446 lncRNA upstream 8344 1282321 ~ 1284445 (+) True G39666
TU53445 lncRNA upstream 12344 1279514 ~ 1280445 (+) True G39665
TU53437 lncRNA upstream 21561 1270591 ~ 1271228 (+) True G39661
TU53435 lncRNA upstream 24404 1265944 ~ 1268385 (+) False LOC111192492
TU53436 lncRNA upstream 24404 1265944 ~ 1268385 (+) False LOC111192492
TU53458 lncRNA downstream 17640 1323881 ~ 1324207 (+) True G39673
TU53439 lncRNA downstream 20982 1327223 ~ 1334616 (+) True G39662
TU53442 lncRNA downstream 21313 1327554 ~ 1330780 (+) False G39662
TU53465 lncRNA downstream 33582 1339823 ~ 1351454 (+) False G39676
TU53469 lncRNA downstream 33582 1339823 ~ 1342388 (+) True G39676
XM_022669483.1 mRNA upstream 24413 1265857 ~ 1268376 (+) True LOC111192492
XM_022669482.1 mRNA upstream 24413 1266624 ~ 1268376 (+) False LOC111192492
XM_022669481.1 mRNA upstream 24413 1267865 ~ 1268376 (+) False LOC111192492
XM_022669478.1 mRNA upstream 98043 1159772 ~ 1194746 (+) True ap2a2
XM_022669479.1 mRNA upstream 98043 1159773 ~ 1194746 (+) False ap2a2
XM_015608586.2 mRNA downstream 114150 1420391 ~ 1427117 (+) True polr2l
XM_007260235.3 mRNA downstream 134514 1440755 ~ 1445223 (+) True sdhaf2
XM_007260240.2 mRNA downstream 394596 1700837 ~ 1705998 (+) True rplp2
XM_022670136.1 mRNA downstream 454986 1761227 ~ 1794932 (+) True muc2
XM_022670138.1 mRNA downstream 503361 1809602 ~ 1836384 (+) True LOC103030943
TU53383 other upstream 72303 1219806 ~ 1220486 (+) True G39626
TU53369 other upstream 83693 1206787 ~ 1209096 (+) True G39619
XR_455709.3 other upstream 329505 922757 ~ 963284 (+) False plekho2
XR_002649913.1 other upstream 1001767 281585 ~ 291022 (+) False commd2
TU53498 other downstream 104205 1410446 ~ 1413799 (+) False LOC111192494
TU53707 other downstream 473450 1779691 ~ 1782660 (+) False muc2
TU53710 other downstream 475241 1781482 ~ 1785093 (+) False muc2
TU53705 other downstream 477183 1783424 ~ 1784344 (+) False muc2
TU53708 other downstream 477183 1783424 ~ 1786521 (+) False muc2

Expression Profile