RNA id: XM_015601581.2


Basic Information

Item Value
RNA id XM_015601581.2
length 1890
RNA type mRNA
GC content 0.52
exon number 12
gene id LOC103032290
representative False

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 417368 ~ 447315 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGGAACTTACAAGGCGATTGGAACGCACCCCATATCTACGCTATATTGAGAATCCGCAtatagtttacagtgtgaaggAAGGACATGCAAGACAGCCTGGCCTTCACTTCTCGGCGATCACCAGTCGTCTGTCTGAATGGCTGCGTCGCCTCCAGTCAGCCTCTAGCATCAAACATCGGACTAGATATCCTGAAGAGAGGTGGCAATGCTGCAGATGCTGCTGTGGCTGTAGCAGCTGCTCTGAATGTGACGGAGCCCGTCAGCACTGGCCTGGGTGGAGATGCTTTCTGCCTCTTCTATGATGCGACTTCTCGACAGGTGCGAGGACTCAATGGAAGtggTAAAAGTCCCAAAGCTCTAACTCTGGATCTGATGGAGAGGTGTGGCTTCAGTCAGACTAACCCTCCTTCCATATTTCATGCACACAACGTCACTGTTCCTGGAGCTGCAGCGTGTTGGTGTGACACTGTGGCAATGTTTGGCAGTAAAAAGCTGTCTTTAGCTGATCTGCTGCAGCCGGCGGTAGACCTGGCTCAGAGGGGCTTTCCTGTGGCTGAAATCACAGCGTATCACTGGGCCAGGGGGGCTGAAACCCTGAAGGCTGCTGGGAGAGACCTGGGTGGAGATTTACTCATTAACAACAGGCCACCCAAACACGGGCAGGTCATGACCAACCCCAGCCTGGCACACACCTTACaggagcTGGCCCTGCGGGGGAAGGCGGGGTTTTATGAGGGCAGGATTGCTGAGGCTGTGGTTGACGTGGTGAGAGAAGCTGGTGGTGTGATGAGTCTGGATGACCTGAAGAATCACGTCACGACTGAAATCACACCGATCTACACTGATTATAAAACGGTGAGACTGTGGGAGGTCCCACCCAACACTCAGGGAATGGCAGCCCTCATTGCCCTTAATATCCTCCAGAATTTCCCCATTAAAGATCTGGCTCACAACAGTGCGGACTACCTGCATGTCCTGGCTGAGGCGTTAAAACTGAGCATGACTGATACCATGCACTACAGCACCGACCCGGACCGAGTTACAGTGCCTGTAGAGGGGCTTCTGTCCCAGCAGTACGCACTACAGCGCAGCCAGACCATTCACATGGACAAAGccgggagtgtgtgtgagcctGGGATTCCCACAGGAAGTGACACGGTGTATTTCACAGTGGTGGACGGAGAGGGGAACGCCTGCTCTTTTGTCAACAGTAACTACATGGGATTAGGCACTGGTCTAGTCCCCCGTAACTGTGGCTTTTCTCTTCAAAACAGAGGAGCTAACTTCTCTCTGGACCCCAGGCATGTGAATTGTTTAGGCCCAGAGAAAAGGCCCTATCACACTATAATCCCAGCCATGCTGACTGAAGCGTCCTCAGGAAACCTGCTGTGTTCCTATGGGGTAATGGGAGGCTTTATGCAGCCTCAGGGCCATGTGCAGGTATTGCTTAATATGCTGGAATTTGGAATGAGTCCTCAGGTTGCACTGGATGCCCCACGTGTGTTTGTGCAGTTTGACCAGGCTGctcagCAATGGCAGCTTTATTTGGAGGAGGGGATGAACCAAGAAGTGGTTGAAGATCTGAGAAGGCGTGGCCATGTGGTGAACTGGCCAATAGAAGGGCACGAGCGGGCAATGTTTGGACGCGGGCAAGTCATCAGTGTAGGAACATGGTGGGACCCAACCCGTGAAGAAACAAGAGTGCCTCAGAGGGTTCTGTGGGCTGGATCAGACCCCAGAGCTGATGGGTGTGCTGTAGGATATTAGCACAGAGAATAACCACTTAAAATCTGTAATGAGTTTGTCGAGCCACAAGGGAGCGCTCCCGAAtcagtccaaaatgaatgggttcatatggagcaatttttaaacagaaaaattattttattc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53025 lncRNA upstream 5197 411135 ~ 412188 (+) True G39349
TU53030 lncRNA upstream 47604 369143 ~ 369781 (+) True G39352
TU53022 lncRNA upstream 121816 295169 ~ 295569 (+) True G39347
TU53021 lncRNA upstream 122308 294699 ~ 295077 (+) True G39346
XR_002649912.1 lncRNA upstream 161944 248773 ~ 255441 (+) True LOC111192488
TU53053 lncRNA downstream 89790 537105 ~ 538332 (+) True G39372
TU53052 lncRNA downstream 89969 537284 ~ 537979 (+) False G39372
TU53054 lncRNA downstream 89969 537284 ~ 538332 (+) False G39372
TU53152 lncRNA downstream 92183 539498 ~ 539828 (+) True G39452
TU53157 lncRNA downstream 99766 547081 ~ 547352 (+) True G39457
XM_022669465.1 mRNA upstream 36840 297267 ~ 380545 (+) True wwtr1
XM_022669466.1 mRNA upstream 38886 297269 ~ 378499 (+) False wwtr1
XM_022669467.1 mRNA upstream 38886 297269 ~ 378499 (+) False wwtr1
XM_022669464.1 mRNA upstream 126363 281585 ~ 291022 (+) True commd2
XM_022670127.1 mRNA upstream 178389 159102 ~ 238996 (+) True LOC103034506
XM_007234270.3 mRNA downstream 14165 461480 ~ 471204 (+) True LOC103032607
XM_022669471.1 mRNA downstream 31957 479272 ~ 533627 (+) True cp
XM_022669472.1 mRNA downstream 170842 618157 ~ 637895 (+) True LOC103036425
XM_007239785.3 mRNA downstream 170843 618158 ~ 637895 (+) False LOC103036425
XM_007239783.3 mRNA downstream 224566 671881 ~ 681622 (+) False immp1l
XR_002649913.1 other upstream 126363 281585 ~ 291022 (+) False commd2
XR_455709.3 other downstream 475442 922757 ~ 963284 (+) False plekho2
TU53369 other downstream 759472 1206787 ~ 1209096 (+) True G39619
TU53383 other downstream 772491 1219806 ~ 1220486 (+) True G39626
TU53498 other downstream 963131 1410446 ~ 1413799 (+) False LOC111192494
TU53707 other downstream 1332376 1779691 ~ 1782660 (+) False muc2

Expression Profile