RNA id: XM_022669680.1


Basic Information

Item Value
RNA id XM_022669680.1
length 1289
RNA type mRNA
GC content 0.48
exon number 7
gene id LOC103026778
representative False

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 14711374 ~ 14725957 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACAGATACTTAAAGAATGTTCTCCACTAAAGGAAACCACAAGTGAACAGGTGCTCCACCATCACCGCTCCTCGTTTTCATCTCCTTTTAACTACAACCCTTCTCAAAACAGCAGCATGTCCTTCTCCGGCAGATCCTATGGAAACAGGACTCAAAGCATGTACGGAGGAGCTGGGGGTCAGGGAACCCGTATCTCAACTACCCAGCAAGGGTCGCCCTACGCGTCTCTACGGGGCTTCAATCTCGCCGATGGCCTCGATCTTCACACTTCAAGAAATGAGAAGGCCACCATGCAGAACCTGAACGACCGTCTGGCTTCTTATATGCAGAATGTGCAATCTCTGGAGAAGAGAAACGCTGAGCTGGAGCAGAAGATCAGGGACTGGTATGAAAGTCATTCTGTGGTCTTCCGTGATCACAGTGACTTCTTGGAAAAGGTCAAGGATTTGAGAGACCAGATTGAGTACCTCTCTATGTGCAATACCAAGACCGTACTGGACATCGATAACTCCAATCTGGTGGCTGAAGATTTCAGAATCAAGTATGAAACAGAGCGGAACCTGCGTACCGCAGTGGAGGCGGACACCACCTGCATCAGGTCGGTTCTAGATCAAATGGTTTTTACCCGATCAGATTTGGAGCAGAAGTATGaggacctgaaagaggaactggcCATGCTTGAGAAAAACCATGAAGAGGAGATGGCTCTGGCTCGTGAGCAGACTTCACAGGTGAACGTGTCTGTGGATGCAGCGCCCTCTGCGGATCTGAACGAGGCTTTGACAGAGGTCAGACAGTACTATGAGAACGTGACTGCCAGAAACCGCAGTGACCTGGAGAACTGGTACCAAAACAAGATTTCCACAATGGAGGAGCAACATGACACACACAACGAAGAGCTGCAGAACACCAAAGAGGAACTTAAAGAGCTAAAGAGCACCTTCCAGAGGCTACAGATTGAACTGCAGACCCACCACAATATGagaACATCTAATGAGGAAACATTACGAGACACTGAGGATCAGTTTACTGAGCAGCTGTCAAAGCTGCAGAAGACCATTGATAGCCTGGAGCTCCAACTCAAAAATATCCACACTGAGATGGCCAATAACAAACTGGACTATGACATCCTGCTCAACCTTAAAAGCCATCTGGAGACTGAGATCACAGAGTacaggctgctgctggaggCAGAAGACAGaaGGCTCTGCGGTTTATAATGCGTGTTATGCGACACTtgtaaggaacagaggtgttgccatgttttcctttttattcagcaggtctcgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57326 lncRNA upstream 22621 14685299 ~ 14688753 (+) True G42571
TU57314 lncRNA upstream 42091 14627857 ~ 14669283 (+) True G42564
TU57289 lncRNA upstream 151058 14538385 ~ 14560316 (+) False LOC111192557
TU57291 lncRNA upstream 151058 14550796 ~ 14560316 (+) True LOC111192557
TU57287 lncRNA upstream 165153 14538385 ~ 14546221 (+) False LOC111192557
TU57352 lncRNA downstream 3857 14728460 ~ 14732951 (+) False G42583
TU57357 lncRNA downstream 3857 14728460 ~ 14733285 (+) True G42583
TU57342 lncRNA downstream 16671 14741274 ~ 14749183 (+) True G42579
TU57365 lncRNA downstream 41103 14765706 ~ 14768714 (+) True G42590
TU57374 lncRNA downstream 145753 14870356 ~ 14876200 (+) False G42599
XM_007240250.3 mRNA upstream 51349 14622178 ~ 14660025 (+) True LOC103026177
XM_007240131.3 mRNA upstream 177204 14483941 ~ 14534170 (+) True LOC103044493
XM_015603327.2 mRNA upstream 230920 14462650 ~ 14480454 (+) False bsg
XM_007240135.3 mRNA downstream 109621 14834224 ~ 14868739 (+) True LOC103045821
XM_007240145.3 mRNA downstream 247658 14972261 ~ 14994616 (+) True LOC103022023
XM_007240152.3 mRNA downstream 320671 15045274 ~ 15051775 (+) True LOC103023991
XM_022669684.1 mRNA downstream 321004 15045607 ~ 15051775 (+) False LOC103023991
XM_022669683.1 mRNA downstream 321135 15045738 ~ 15051775 (+) False LOC103023991
XR_002649939.1 other upstream 1089332 13617083 ~ 13622042 (+) False LOC103034435
TU56827 other upstream 1260897 13448592 ~ 13450477 (+) True G42208
TU56657 other upstream 1996346 12705559 ~ 12715028 (+) True G42096
TU56588 other upstream 2077945 12632816 ~ 12633429 (+) True G42068
TU56432 other upstream 2370461 12336542 ~ 12340913 (+) False LOC103047294
TU57395 other downstream 170459 14895062 ~ 14899248 (+) True G42605
TU57948 other downstream 1253966 15978569 ~ 15983525 (+) False LOC103036127
XR_002649941.1 other downstream 1254827 15979430 ~ 15984632 (+) True LOC103036127
TU58501 other downstream 2468935 17193538 ~ 17196116 (+) True G43360
TU58763 other downstream 3287570 18012173 ~ 18014499 (+) True G43537

Expression Profile