RNA id: XR_002649939.1


Basic Information

Item Value
RNA id XR_002649939.1
length 3098
RNA type misc_RNA
GC content 0.40
exon number 3
gene id LOC103034435
representative False

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 13617083 ~ 13622042 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCGGTAGGTGGCGGTATGGCACCTGTAGTTGGTCTGCCAGCCGCCATTAAATCCAATAGAAGAAGAGCccactcagcagcagcagccgtaTTATTATAACAGAGATTTCTCTGCTGAAGaaAGTAATGATCTCCTGTTGCTGGTACACATTTAGTTCCACAAATGCAAAGAATCTTCATCAAGAAGAACTATTAAAACTGGAAGATTCAGAATGAGAGAATATGATGTCGATAGACTCCAGTACCCTAAAAACATTCCCTGCTACTCAACACACCAATGCATCTCCTGGACAAACTAAAGAGAAATCTCACCAGTGCTCTGAGTGTGGAAAGTGGTTTACTAGTCAGTGTATTCTCCAAACACACCAGcgtgttcacactggagagaaacccttTCACTGCTCagtctgtgggaagagttttagtcagCAGGGTAGTCTCcgaacacaccagcgcattcacactggagaaaaaccttatgagtgctcagactgtgggaaacgTTTTAATCAGCAGGGTCATCTCCAATTACACCAGtgtattcacactggagaggAACCGTATTattgctcagagtgtgggaagagttttagtgcGAGAGGTTCCCTGacaaaacaccagcgcattcacactggagagaaaccgtatcactgtttaGAGTGTGGAAAGAAATTTAGACTGAGTGGTGCCCTCacaaaacaccagcgcattcacactggagagaaaccatatcagtgctcagagtgtggaaagtGTTTTACTACACAATGTAAGCTTCAGGCACACCAGCGAATTCACACCGGAGATAAACCTTACCTCTGCTTGGAATGTGGGAAAAGTTTTGGTACACAGGGAAATCTGCTaaaacatcagcgcattcacactggcgagaaaccatatcactgttcATATTGTAGGAAGAGCTTCAATCACCAGGTTTCTCTGCAaaaacatcagcgcattcacactggagagaaaccacatTCCTGCTTAGCGTGTGGAAAGAGGTTTAGAGAAAGGCATACCCTGATggtacaccagcgcattcacactggagaaaggCCGTATCAGTGTTCCAAGTGTGACAAGAGTTTTAAACACCAGATTTCTCTACGAATACATCagctcattcacactggagagaaaccgttttcTTGCTCAGAATGTGGGAAGGGTTTTCGAGAGAGAGGTTCCCTGATtgtgcaccagcgcattcacagtggagagaaaccgtatccctgctcagagtgtgggaaaaCTTTTAGAGTGAGTGGTTCCCTTataaaacaccagcgcattcacactggagataAACCATATCACTGTTCGGAGTGTAAAAAAGGTTTTACCACACAGTGTTCTCTCCAAAATCACCTGCGCAGTCACACTGGAGAGACACCTCATCGCTGTTTGGAGTGTGGGAAAAGTTTTAGTACACACGGTAATCTTCAAATTCACCAGAGCATTCACaatggagagaaaccgtatcactgctcagttTGTGGGAAAAGTTTTAGTCAGAAGGGTAATCTTCAAACTCACCAACGTGTTCACAcgggagagaaaccgtatcagtgcacagactgtgggaagagttttagtcagCAGGGTCCTTTtcaaatacaccagcgcattcacactggagagaaaccctaTCAATGCTTGGAGTGTGGTAAGAGTTTTAGGGACAGAAGTAGTCAAAAGTATCATAAGCGCATTCACCAAAGAACAAATCAGTAATATTCCTCTGATTTTCAGTTTTAAATTCAGATACTTACAAATATGTTTGGCAgtaaaataataagacattttttatttatatggcaCCTTCTCTAAGAGCTCAAAGCACTTAAAAACATTAGGTAAAAACAGATTGTGTTGTCATTTTGGAATTTGTGCTATGTTTTACAACCTCTTTTTTCCAAGGCAGTAATgaattgggttttttttttttcgtcaaaAAATTGCAGTCATACTGCAGTAATCATATAAACATAGAGCACACATATTTTGTATACATCATTATAATTGAATTCAGTTCACTTCAAATCTATTTATATTGTGCTTTTTACAATAGATGTTCTCACAAAGAAGCTTTACAGAGATCCAGATCCAAGCCTCCATTAAGAAATGCAATGGCAGTTGCAAGACTTAAGAAAACTTACTTTTCTTTAGAATTATTTGATtcataatgaaaagaaaatcctATAATCGCTGTGTATTAATTTGTATGGGTTTCCTCTGTTCTGTGTAGAGATGATTAACCTTTCAACATATTTGTAAGAATGCATTCAGAATAAACATAACACTTGTGAACTGGCCAGATGAAGATTGTGTTTTTAGTGAATGATATCTTCAGAGAAGAAATCATTCAGGATTGTGGACCTTTCAAGAGTCAGAACCTTAATCACCTTCTGCTGTGATATGAGGGACTAAAGTTAAGAGGCTTTTCTGGCACACCAACAATGTACAATGTACAAAAGTACACAGTGGAGTAATATTATATTCTCCTGGCACCATGGTACAACATGGAGAAACACAAGACCTGTTTAAAGCATCCTACTTAAGTACATAAAGGCTGACTAGGCTTTTCCATTTCCTCATATTGATCATCACCTGGAAGAACAGGACAAATCTCAACAAGAAGTTACTGGGTGTAAGGGCTAGAAACTGTGTTCTACACAGTGCAAAGCTCAGAACACCAGACCAGAAGATACCATCCTGAAGAATGTCATGTGTGGGTACACACACCCCAATAGCTTGTGATTACAGATGGTATAGTACCACCTTTTCCAGTGCCAGTGTGGAAACCTCGATCATTGACTCACTGTTTAAATACCTGTGGCTTCGGTTATCACATGGTCTTCTTTGTCTTGCTTCCTGTTCTGCTACAAACAGTTCTGTGATATTGAGAACACACAACCTGCctttaatgttttatctaaATTCTGTTCAGTGCTTTTGATGCCaaagtgatatttttttcttttgatagttaatgttaattctgtttttttatgtttgggtTTGTACTGTCATGCTTGACCAGCTAAAGTAGGGCCACTCaaagctgtaaataaaaataatgcatggAATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56848 lncRNA upstream 81057 13530352 ~ 13536026 (+) True G42220
TU56835 lncRNA upstream 99402 13509024 ~ 13517681 (+) False LOC103032215
TU56836 lncRNA upstream 99402 13509061 ~ 13517681 (+) False LOC103032215
TU56828 lncRNA upstream 141247 13472627 ~ 13475836 (+) True G42209
TU56814 lncRNA upstream 245278 13369304 ~ 13371805 (+) True G42195
TU57055 lncRNA downstream 214130 13836172 ~ 13857361 (+) False LOC103037142
TU57058 lncRNA downstream 214827 13836869 ~ 13838554 (+) False LOC103037142
TU57070 lncRNA downstream 376878 13998920 ~ 14002697 (+) True G42389
TU57067 lncRNA downstream 399601 14021643 ~ 14025396 (+) True G42386
TU57143 lncRNA downstream 434556 14056598 ~ 14073336 (+) True G42442
XM_007240097.3 mRNA upstream 4671 13592628 ~ 13612412 (+) True LOC103034113
XM_022669628.1 mRNA upstream 26666 13562232 ~ 13590417 (+) True LOC103024927
XM_022669629.1 mRNA upstream 26666 13566021 ~ 13590417 (+) False LOC103024927
XM_015603311.2 mRNA upstream 57453 13552912 ~ 13559630 (+) False LOC103033790
XM_007240096.3 mRNA upstream 57453 13554570 ~ 13559630 (+) True LOC103033790
XM_007240101.3 mRNA downstream 44360 13666402 ~ 13673565 (+) True trmt13
XM_007240102.3 mRNA downstream 72814 13694856 ~ 13700883 (+) True rtca
XM_022669633.1 mRNA downstream 88004 13710046 ~ 13793719 (+) True cdc14a
XM_022669639.1 mRNA downstream 88004 13710046 ~ 13793719 (+) False cdc14a
XM_022669634.1 mRNA downstream 88004 13710046 ~ 13793719 (+) False cdc14a
TU56827 other upstream 166606 13448592 ~ 13450477 (+) True G42208
TU56657 other upstream 902055 12705559 ~ 12715028 (+) True G42096
TU56588 other upstream 983654 12632816 ~ 12633429 (+) True G42068
TU56432 other upstream 1276170 12336542 ~ 12340913 (+) False LOC103047294
XR_002649936.1 other upstream 1276198 12334344 ~ 12340885 (+) True LOC103047294
TU57395 other downstream 1273020 14895062 ~ 14899248 (+) True G42605
TU57948 other downstream 2356527 15978569 ~ 15983525 (+) False LOC103036127
XR_002649941.1 other downstream 2357388 15979430 ~ 15984632 (+) True LOC103036127
TU58501 other downstream 3571496 17193538 ~ 17196116 (+) True G43360
TU58763 other downstream 4390131 18012173 ~ 18014499 (+) True G43537

Expression Profile