RNA id: XM_022669496.1


Basic Information

Item Value
RNA id XM_022669496.1
length 1236
RNA type mRNA
GC content 0.48
exon number 9
gene id zfand6
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 2986365 ~ 3006325 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TATTACAGTGGGGGGATGGAGGGTGACAACAGTGACAAACAGGCAGTTTCTGGGTGGGGGAGCTGCTGAAATACGACATCCAGGAAAAACAGTCGCTTAACAGCCGTTTAACAGCCACATTTATCCGCATTTATCTTAAGTTACTGAAGGAAACGGAGAGAATTAGCCGGACTTGTTGACGCCGGGAGGAAAGTTGGGCTGTGAAACAGCTGTGAGAGTCAGAGGCGaCAACTCAAGAGGCAGAAACAACTGAGAAAAAAGAGTTTTTAAGGCTTCACTAGGGGATCGGCCCCTTTGAAAGCAGCAGGGAGGAAAGCAGGGACAGTCAGCAGTGAGCAGATAAACCAAGGAGAGTCAGATAGAGCAGGAAGATGGCAGAGGAAGAGAAAGACATGGCTCAGCAGACCAACCAAACCCAAGTGCCTATTCCGTGTACCGCGGGCTGTGGCTTCTACGGCAACCCCCGAAACAACGGCATGTGCTCCATCTGCTACAAAGACTCTTTACAAAgacagaactccagcagcagagTCAGCGACCCAGTGTCGACTAGATTCAGCACTTTAGGAGAATCACTCTCAACACAGTCCAACACAGTCACGGCTTCGTCAGCACTACAGCTAAACAGTCAAAGCATCGTAACAGCAACAGAAAGAGCACAAGAGGAGCTGACTTCAGGAGAAGCCCAGGATGAGCTAAAAACAGAAGAAGTTGCAGgtCCCTCTAACAGTGCAGAGGTAGCTAGTGTTCAGGAGAGCGTTACCATGAGTGAGATGTTAGGATCATTTGGATCATCAGCAGAGGTCCTAGGTAGGGTAAGAAAGAGAAAACTGGATGAAGTGCTTCAGCTAGATGGAGAAGGTGCCTCGGGATCATGCGTCTCAGTGCAGTCTTCTGCCCCTGTAGTGGAGAACTCTAAACCCAAAAAAAAGCGCTGCTTCATCTGTAACAAGAAACTGGCCTTAACTGACTACAACTGCCGGTGTGGGAACTATTTCTGTGGTGTTCACCGATGCACTATTGACCACAACTGCCCCTACGACTACAAAGCTGAAGCGGCTGAGAAAATCAGGAAGGAGAATCCCGTCGTTGCTGGAGAGAAGATACAGAAGATCTGAGCTGTGGCTTGTCATGGACAATCCTTTTTCTCCACTTATCTCCTCTTGCAAATTTACCACTGGAACTCTGAACAATTAAACCATCACAGACCCTTCAGTGATGCATGCCTGACTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54005 lncRNA upstream 151339 2832705 ~ 2835026 (+) True G40018
TU54001 lncRNA upstream 175832 2807150 ~ 2810533 (+) True G40014
XR_002650014.1 lncRNA upstream 192550 2792540 ~ 2793815 (+) True LOC111192560
TU53999 lncRNA upstream 192654 2792534 ~ 2793711 (+) False LOC111192560
TU53934 lncRNA upstream 487074 2498869 ~ 2499291 (+) True G39965
TU54026 lncRNA downstream 36079 3042404 ~ 3042631 (+) True G40035
TU54110 lncRNA downstream 262930 3269255 ~ 3270205 (+) True G40095
TU54107 lncRNA downstream 271354 3277679 ~ 3278297 (+) True G40093
TU54108 lncRNA downstream 271354 3277679 ~ 3278273 (+) False G40093
TU54128 lncRNA downstream 376317 3382642 ~ 3401938 (+) True LOC103025846
XM_007237229.3 mRNA upstream 124982 2801018 ~ 2861383 (+) True kiaa1024
XM_022670140.1 mRNA upstream 247709 2597692 ~ 2738656 (+) True LOC103029230
XM_007238867.3 mRNA upstream 579977 2392115 ~ 2406388 (+) True LOC103032316
XM_007238866.3 mRNA upstream 598277 2382053 ~ 2388088 (+) False LOC103031990
XM_015602896.2 mRNA upstream 598277 2382061 ~ 2388088 (+) True LOC103031990
XM_007258155.3 mRNA downstream 2009 3008334 ~ 3042100 (+) True fah
XM_022669503.1 mRNA downstream 116267 3122592 ~ 3277613 (+) True arnt2
XM_022669504.1 mRNA downstream 116267 3122592 ~ 3277613 (+) False arnt2
XM_022669505.1 mRNA downstream 116267 3122592 ~ 3277613 (+) False arnt2
XM_022669507.1 mRNA downstream 116267 3122592 ~ 3277613 (+) False arnt2
TU53987 other upstream 174869 2689967 ~ 2811496 (+) False LOC103029230
TU53995 other upstream 248148 2735596 ~ 2738217 (+) False LOC103029230
TU53708 other upstream 1199844 1783424 ~ 1786521 (+) False muc2
TU53709 other upstream 1200129 1783424 ~ 1786236 (+) False muc2
TU53710 other upstream 1201272 1781482 ~ 1785093 (+) False muc2
TU54378 other downstream 1128185 4134510 ~ 4135585 (+) True G40318
TU54660 other downstream 2302221 5308546 ~ 5310807 (+) False snrpa1
TU54910 other downstream 3527040 6533365 ~ 6533674 (+) True G40756
XR_001518717.2 other downstream 4820198 7826523 ~ 7826914 (+) True LOC107197696
TU55733 other downstream 6989428 9995753 ~ 10005398 (+) False LOC103037553

Expression Profile