RNA id: XM_022669460.1


Basic Information

Item Value
RNA id XM_022669460.1
length 2623
RNA type mRNA
GC content 0.53
exon number 17
gene id LOC103033866
representative False

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 32499 ~ 80030 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctgctgctgctgctgctgcgcctGATGGTCCAGAAGTTAGCAAGCTAGCGATAACCTACCTGAAAACGCTCCTGAATCTTCTGCTCCGGAGTAGGAAGGGTCGCTGCCTCCGGCCCATGTCGGCTCGGCCGGGAATATGCTCTGTCATCGGGGCTGGTAGTTTAGCTAGTTAACGCGGTTCCCGCGGTTCCAGCGGTCAGTCTGGGAATGCCGGTGTGAAGCTGGGGCCGGGGATTTACTGTGTCTCCCATCGTCCAGGGCGTTCATCGTTCCTCTGCTGCCCGCTTTAGCGGCCTAGCTACACGGAGAAATGTCGACCAGAACGCCGCTGCCCACCGTTAACGAGCGCGACACGGAGAATCATTCATCAGTAGACGGTTATCCCGACCCCCCGGCACCTCCAGCTAAATCATCCAGTCGACAGAGTCTCCCACGATGTCGGAACTCTGTGGCGTCCATTACAGACGAACAGCCTCACGTTGGGAACTACAGGTTGCTGAAAACCATCGGCAAAGGCAACTTCGCCAAAGTCAAACTAGCGCGCCATATTTTAACAGGACGTGAGgtTGCTGTGAAGATTATTGATAAGACCCAGTTAAACCCCACTAGTTTACAGAAGCTTTTTCGTGAAGTACGGATTATGAAGATTTTGAATCACCCTAATATAGttaAGTTATTTGAAGTCATTGAAACGGACAAGACACTTTATCTGATAATGGAGTATGCCAGTGGAGGCGAAGTATTCGACTACTTAGTTGCACATGGAAGAATGAAGGAGAAAGAAGCCAGGGCCAAGTTTCGACAGATTGTGTCTGCAGTGCAGTATTGTCATCAGAAGAGGATAGTACACAGGGATCTCAAAGCTGAGAACTTGCTCCTGGATGCTGATATGAATATAAAGATAGCAGACTTCGGCTTCAGTAATGAATTCACCATCGGGAGCAAATTGGACACGTTCTGCGGCAGCCCCCCGTATGCTGCTCCTGAGCTCTTTCAGGGTAAAAAGTACGATGGTCCTGAGGTGGATGTGTGGAGCTTGGGGGTTATTCTCTATACGCTGGTCAGTGGATCCCTACCCTTTGATGGACAGAACTTAAAGGAGCTGAGAGAACGAGTGCTAAGAGGGAAGTATCGCATTCCATTCTATATGTCCACAGACTGTGAAAACCTGCTGAAGAAACTGCTGGTTCTCAACCCTGGCAAACGTGGTAGTCTGGAGCAAATCATGAAAGATCGTTGGATGAATGTGGGCCACGAGGAGGAGGAGCTCAAACCCTACACAGAACCTGAGTCTGACTTCAGTGACACCAAACGaatagaCCTGATGATCACGATGGGTTTCCCTAAAGATGAGATTAATGATGCTTTAGTGGGTCAGAAGTATGATGAGATCATGGCTACTTACTTGCTTTTGGGCAGAAAAGCTCCTGAGTTTGAAGGAAGTGAATCACTGTCCACTACAAATCTGTGTCAGAGGCAACGACCCAGCAGTGACCTGAACAACAGCTCTTCACAGTCTCCAGCTCACTCTAAAGTGCAGCGCAGTATTTCTGCCACTCAGAAACAGCGCCGCTATAGTGACCACGTTGCCCCCTCCATCCCGCCGGCCGTGTCCTACACTAAACGCGTGCAGGCCAACAGTGTGGAGggagagaagaaggaggagtGGGAAGCAGCTCGTAAACTCCCCACCTCCAACTCAaagggagaaatgtctgtatcACCACTGACCACACAGGAGCACCGGAAATCCTCTACAGCCTCAGGGAACAGTGCAGCAGGGGGGATGACCCGGAGGAACACGTACGTCTGTGAGCGTTCCAGCTCAGATCGTTATTCAGCCATCCCCAATGGGAAGGACAGCAGtctgacGGAGATGTCTGCGTCTGGAAGtggctcctctgtgtctccagGAGCTTCCTCCGCGTTGGCCTCCACTAGGCCTCGTCATGTAAAGTCTATGTCTGCCTCAGGCCACCCCACCAAGTCCCCGCTTCCCCCCATCAAGGACAACGCTGAGTACAAGGGCTCCCGGGCTCCAGCTGCCTCTCCATCAGCacacagcatcagcagcaccaCCCCAGACCGGACCCGCTTTCCTCGGGGCAGCTCCAGCCGCAGCACTTTCCACGGAGCTCAGCTTCGAGACCGCCGCAGCGCCACCTACAATGGCCCACCGGCCTCACCCACACTCTCCCACGACACAGGGGCTCTGTCTCAGGCTCGCAGGGGCACCTCCACCGGGATCATCAGCAAGATCACGTCCAAGTTTGTGCGAAGGAGCGGCTCAGGAGACCCTAAAGATGATGGCCGAGACTCGAAGCCACGTTCACTGCGCTTCACGTGGAGCATGAAGACTACGTCATCTATGGAGCCCGCAGACATGATGAGGGAGATCCGCAAGGTGCTGGACGCCAACAACTGCGACTACGAGCAGCGCGAGTGCTTCCTGCTTTTCTGCGTCCACGGAGACTCACAGCAAGACAGCCTCGTCCAATGGGAGATGGAAGTATGCAAGTTGCCCCGCCTTTCGCTGAACGGCGTGCGTTTCAAACGCATCTCGGGCACCTCCATCGCATTCAAGAACATCGCATCAAAGATTGCCAACGAGCTGAAGCTGTGA

Function

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005576 extracellular region cellular_component
GO:0005524 ATP binding molecular_function
GO:0008009 chemokine activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52996 lncRNA downstream 75500 153892 ~ 154288 (+) True G39322
TU53001 lncRNA downstream 96433 174825 ~ 182840 (+) True G39327
TU53006 lncRNA downstream 141752 220144 ~ 228257 (+) True G39331
XR_002649912.1 lncRNA downstream 170381 248773 ~ 255441 (+) True LOC111192488
TU53021 lncRNA downstream 216307 294699 ~ 295077 (+) True G39346
XM_022669457.1 mRNA upstream 8628 506 ~ 23871 (+) True ptk7
XM_022670127.1 mRNA downstream 80710 159102 ~ 238996 (+) True LOC103034506
XM_022669464.1 mRNA downstream 203193 281585 ~ 291022 (+) True commd2
XM_022669465.1 mRNA downstream 218875 297267 ~ 380545 (+) True wwtr1
XM_022669466.1 mRNA downstream 218877 297269 ~ 378499 (+) False wwtr1
XM_022669467.1 mRNA downstream 218877 297269 ~ 378499 (+) False wwtr1
XR_002649913.1 other downstream 203193 281585 ~ 291022 (+) False commd2
XR_455709.3 other downstream 844365 922757 ~ 963284 (+) False plekho2
TU53369 other downstream 1128395 1206787 ~ 1209096 (+) True G39619
TU53383 other downstream 1141414 1219806 ~ 1220486 (+) True G39626
TU53498 other downstream 1332054 1410446 ~ 1413799 (+) False LOC111192494

Expression Profile