RNA id: XM_022669479.1


Basic Information

Item Value
RNA id XM_022669479.1
length 4992
RNA type mRNA
GC content 0.47
exon number 22
gene id ap2a2
representative False

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 1159772 ~ 1194746 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctgctgtgtttagCGGACCTGTAGCAGAAGAAGAGTGGGTGTGTAGCGCTGCTAGGCTGTTAGCCGCTCTGATTCGGTTTGTAATCCGGTTTTTGATCCGGTTTGTGGGGAGATGCCGGCTGTGTCTAAAGGGGACGGGATGCGGGGCCTGGCGGTCTTCATCTCCGACATTAGGAACTGTAAAAGTAAAGAGGCTGAAATCAAAAGAATAAACAAAGAGTTGGCCAATATTCGCTCCAAGTTTAAAGGAGATAAAGCGCTGGATGGCTACAGTAAGAAGAAATATGTCTGTAAACTGCTCTTCATTTTTCTGCTGGGTCACGACATCGATTTCGGCCACATGGAGGCAGTCAACCTCCTCAGCTCCAAcaaatacacagagaaacagatcGGCTACCTGTTCATCTCGGTGCTGGTGAACAGTAACAGCGATCTGATCAGACTGATCAACAACGCCATAAAGAATGACCTGTCCAGCAGAAACCCCACCTACATGAACCTGGCCCTGCACTGCATTGCAAACGTGGGCAGCAGGGAGATGGCAGAGGCATTTGCATCAGAAGTACCACGAATCCTGGTGGCGGGTGACACCATGGACAGTGTGAAGCAGagtgcagcactgtgtttattaCGGCTCAACCGGACCTCTCCTGACCTCGTCCCAATGGGAGAGTGGACTTCACGTGTCGTTCACCTTCTCAACGATCAGCACCTGGGAGTGGTGACCGCTGCAACCAGTCTGATCAGCACTCTGGCTCAGAAAAACCCAGACGACTTCAAGACCTCTGTTTCTCTGGCTGTGGCCAGACTCAGCCGGATCGTCACATCAGCCTCCACTGACCTACAGGACTACACATATTATTTTGTTGCTGCACCGTGGCTGTCAGTCAAACTGCTCCGCCTTCTGCAGTGTTACCCACCACCAGAGGAGGGAGCGATTCGAGGACGCCTGACTGAATGTTTGGAAACAATCCTGAACAAAGCGCAAGAGCCTCCAAAGTCCAAAAAAGTCCAGCACTCCAATGCCAAGAATGCAGTTCTGTTCGAAGCCATCAGTCTCATCATACACCATGACAGtGAACCGACGCTGCTGGTCCGCGCCTGTAATCAGCTGGGTCAGTTTTTGCAGCACAGAGAGACTAATCTGCGCTACCTGGCCTTGGAGAGCATGTGCACCCTCGCCAGTTCAGAGTTCTCCCATGAAGCAGTTAAAACGCACATCGAGACTGTAATCAACTCTCTTAAGactGAGCGGGATGTGAGTGTGAGGCAGCGTGCTGTTGACCTGCTCTACGCCATGTGTGATCGCAGCAACGCCAAACAGATCGTCACAGAGATGCTCAGTTACTTAGAAACAGCCGACTACTCCATCCGAGAGGAAATCgTCCTGAAAGTGGCCATCCTCGCAGAAAAGTACGCAGTGGACTACACCTGGTACGTGGACACCATCCTGAACCTGATCCGCATTGCTGGAGACTACGTGAGCGAGGAGGTTTGGTACAGAGTCATTCAGATCGTCATCAACCGGGACGACGTTCAGGGATACGCCGCCAAAACCGTGTTTGAGgCATTGCAGGCTCCAGCTTGTCATGAGAACTTGGTAAAGGTGGGCGGATACATCCTGGGCGAGTTTGGCAACCTAATTGCTGGAGACCCTCGATCCAGTCCACTTGTTCAGTTCCACCTGCTCCACTCCAAGTTCCACCTGTGTTCGGTTCCCACTCGCGCTCTGCTGCTCTCGGCGTACGTTAAGTTCATCAACCTGTTCCCGGAAGTGAAAGGTACCATACAGGAAGTGCTGCGCTCGGATAGTCAGCTGAGGAATGCGGATGTGGAGCTTCAGCAGCGAGCTGTGGAGTACCTCCGCCTGAGCTGCATCGCCACCACGGACATACTGGCTACAGTTCTGGAGGAGATGCCTCCTTTCCCCGAGCGAGAGTCTTCCATCTTGGCGaaactgaagaagaagaaaggttCTGGAACTGTGTCTGATATTGAAGACAGTCGCAAAGAGCGCAACGTCAATGCCAACGCCAACGTCAACGGCAGCAGCGATCACACCATCACCAACACAAGCGCAAagGTTACTTCTTCCCCGTCGTCAGATCTTCTGGGCCTGGGGAACAGCTCAGCAGTAAACTCAGCTAGTCCTCCAACCTCCTCACACGCAGCCAGCCTGCTGGTGGATGTGTTCTCAGAAAGCCTGCCTGTAGCAGCTTTGGGTTCTGCCTCTGCACACGTCATAGAGGAAAACTTCTCAAGGTTCGTCTGCAAGAATAACGGAGTGTTGTTTGAGAGTCAGCTGCTGCAGATTGGCCTGAAGTCTGAGTTCAGACAGAACCTGGGTCGCATGTACATTTTCTACGGAAACAAAACGTCAACGCAGTTCCTGAATTTTTCATCCTCTGTGGTCTGTCCCGAACCACTCAGCTCCCAGCTGAACATTCACATGAAAGCTGCTGACCCTGTGCTGGACGGAGGAGCTCAGCTTCAGCAGATCCTGAACATCGAGTGCATATCTGACTTTGTGGAAGCACCAGTGCTTAATATTCAATTcagGTACGGAGGCAGCACACAGAATATCTCCGTCAGGCTTCCCGTCACCCTCAACAAGTTCTTCCAGCCCACAGAGATGACGTCTCAGGACTTCTTCCAGCGCTGGAAGCAGCTCAGCCCTCCCCAGCAGGAGGTGCAGAAGATCTTCAAAGCCAAGCATTCTATGGACACAGAAATCACGAAAGCTAAGATCATCGGGTTTGGAACAGCTCTGCTGGATGGAGTAGACCCAAATCCTTCAAACTTTGTGGGTGCCGGAGTGATCCACACCAAGACTATACAGGTTGGCTGCCTCCTGAGACTAGAGCCCAACACTCAGGCACAGATGTACCGACTGACTCTAAGGACGAGCCGCGAGTCGGTGACTCAGAGACTGAGTGATCTTCTGTCGGATCAGTTCTGAGCACTCGTCTTCCCTCCTCCCTGCCATCAGACACGCCTCCCTCTCCTTACATCTGTTACCTCTTACACATTTCCTCATATAAATCAATATTAACTCCATGTACAGTGTACATTTCCTGatgcctttattttttactcatatAAGAACGAGCCTCTTCTCCACTTTAGCTGACTGATCTCTGTCTGCTTCAGGCCTGCAGCTTCATCACAGATGcaataatgttttattgtttttggtttatttggggtgttttttttatgtttgttttatataccAGAGTTAAACCATCTCCCTCAGACTCAGACAGTGTAGTGAACGAGTGAGGGGTGGTTGGATTACAGGAATGGTACTTTTCTTCTGCAGTTTCTACAGTTTATCAGTGTGAGCAGGAACAGCTAGATGTAGGAAAGTTCTGGTCTGGTCACTCAGTAAATAAAGTGCCTTGGTGGAATAAGAGGTGGAGACTCAGGGGACAGAAGATGTTTCATACCTGCCTTTCCTGGAAGCAAAGAGTTAGACGTGACTGAGTGCAGGGCTGCACGATATGAAAAAAtcgcagtgttttttattggggCTGTGCTGTAGAAGAACACCTTTTGTTTCACCAAATAACCTTTCAAGGCAATTCCAAAAATTCTAGCATTTGTccaaaaatgttctgcattattcagtggtttggtgtgaaacAGTTTATTGTAGTCAAACTGACTTCTTTACATTAGAGGTGAACCAAACGAGACGTTGTCctgaaaataacacaaataCAGCCGTTTTAATTACTCAAACagtaaataatcatttttatgtAGAAAGTCAgtgatggtaaaaaaaataggcaAATCTGAACAAAATATGTCTTCCTCTGCATGTACCCCTTCACTATTTTAAGGGTATCATTGCTTTTTGATAAGGGTATCAAAAAGCAAAACCCTCTCAAAATTATGATGGaacataaaaaatgattaaaaaaaaaatagtctcaAGCATTCagtgtaaaacacttttaaCTCTTTCATTTCCCCACCAagggaaaatatttattttggacagtattaaaaaacaagtgtttttattctcttttttaatgtttttaaaatatatgccTCTATGATACTTTTGGTAAAACCAGAATACAAtctgcaaaataataataataataataataataataataataataatattagattaatgattaaaaacagaaaacatgtaGTGCTAGTTTAGGCAGAGCTATATCTTGCAGCCCTTCTACACTCACAATGTTCTCTCTCAGAGCTGCTGTGCTGAGAGATCGGTGTTTACGAGGTTGGATCTTTAATCTTTTATACAGTGGCACTACCACTGCCAGCTTCTCCATGTGCCTTTAACTTGTATGTTCCCTCAGGGTGATGATCTGTCTGAGTGATGTTCCCTTTGGGTGTTCTTCTTGGGTAATGTTACCTTGGGGTGATGTTCTCTCAGGGTGATGTTTCCTCTGGGTGATGTTACCTTGGGGTGATGTTCTCATGGGGTGATGTTAACTCTGGGTGATGTTCTTCTTGGGTAATGTTACCTTGGGGTGATGTTCTCTTGGGGTGATGTTAACTCTGGGTGATGTTCTTCTTGGGTAATGTTACCTTGGGGTGATGTTCTCATGGGGTGATGTTATCTCTGGGTGATGTTCTTCTTGGGTAATGTTACCTTGGGGTGATGTTCTCTCAGGGTGATGTTTCCTCTGGGTGATGTTACCTTGGGGTGATGTTCTCATGGGGTGATGTTAACTCTGGGTGATGTTCTTCTTGGGTAATGTTACCTTGGGGTGATATTACCTTGGAGTGATGTTCTCACTGGGTGATGTTAACTCTGGGTGATGTTCTTTTTGGGTAATGTTACCTTGGGGTGATGTTCTCTCGGGGTGATGTTTCCTCTGGGTGATGTTTTTCTTGGGATGATGTTTCCTCGGGGTGATGTTCTCTCGAGGTGATATTCCTGTGGCTCTGTAACTGtgtactatgtttttttttgccaaataaactgcattaaaacacGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002649915.1 lncRNA upstream 695 1153544 ~ 1159078 (+) True LOC111192491
TU53349 lncRNA upstream 707 1153616 ~ 1159066 (+) False LOC111192491
TU53274 lncRNA upstream 114431 1044108 ~ 1045342 (+) False pdcd7
TU53256 lncRNA upstream 192445 964928 ~ 967328 (+) True G39539
TU53243 lncRNA upstream 279877 879685 ~ 879896 (+) True G39529
TU53377 lncRNA downstream 14536 1209282 ~ 1209733 (+) True G39621
TU53378 lncRNA downstream 15218 1209964 ~ 1214713 (+) True G39622
TU53382 lncRNA downstream 21556 1216302 ~ 1218795 (+) True G39625
TU53388 lncRNA downstream 30777 1225523 ~ 1227051 (+) True G39629
TU53435 lncRNA downstream 71198 1265944 ~ 1268385 (+) False LOC111192492
XM_007260228.3 mRNA upstream 6485 1123343 ~ 1153288 (+) True LOC103024602
XM_007260226.2 mRNA upstream 67606 1082551 ~ 1092167 (+) True rasl12
XM_007260225.3 mRNA upstream 88157 1048244 ~ 1071616 (+) True ubap1l
XM_022670130.1 mRNA upstream 114426 1038573 ~ 1045347 (+) True pdcd7
XM_007260223.3 mRNA upstream 122839 1011639 ~ 1036934 (+) False clpx
XM_022669483.1 mRNA downstream 71111 1265857 ~ 1268376 (+) True LOC111192492
XM_022669482.1 mRNA downstream 71878 1266624 ~ 1268376 (+) False LOC111192492
XM_022669481.1 mRNA downstream 73119 1267865 ~ 1268376 (+) False LOC111192492
XM_007260233.3 mRNA downstream 98043 1292789 ~ 1306241 (+) True LOC103026058
XM_015608586.2 mRNA downstream 225645 1420391 ~ 1427117 (+) True polr2l
XR_455709.3 other upstream 196489 922757 ~ 963284 (+) False plekho2
XR_002649913.1 other upstream 868751 281585 ~ 291022 (+) False commd2
TU53369 other downstream 12041 1206787 ~ 1209096 (+) True G39619
TU53383 other downstream 25060 1219806 ~ 1220486 (+) True G39626
TU53498 other downstream 215700 1410446 ~ 1413799 (+) False LOC111192494
TU53707 other downstream 584945 1779691 ~ 1782660 (+) False muc2
TU53710 other downstream 586736 1781482 ~ 1785093 (+) False muc2

Expression Profile