RNA id: XM_022669490.1


Basic Information

Item Value
RNA id XM_022669490.1
length 2775
RNA type mRNA
GC content 0.55
exon number 18
gene id LOC111192498
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 2118643 ~ 2235758 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ggcagagtgagaggaggagtgtgagagtgagtgagtgtgtgagtgagagagaggagtgagagaaCTTCGCTCGagacttcttcttcttcttcgcaGTGAAAGAAAAGGGGAATACACGCGCTCGGGGTTCGAGCCATGATGTGAGGCGCGCGCACACCGGGGGGCTCCACTTCTTttgatgttgttgttgtttgcgGCGCGAGCTTTTGCAGAAGCgctatagaaagagagagggagagaaagagaaggagaccGCTCACACCATGCAGCCTGCAGCTCTCTCCACCACCCTAACTCTACTGCTCCTCCTGCTACAGCTGCTGCTCTGCGCGCGCGgtgTGTTGGGCAGTGCGGAGTGCTCGTGTGGGCGGAACCACTTCACCTGTGCGGTCAGTGTGTTTGGAGAGTGCACCTGCATACCAGCGCAGTGGCAGTGTGATGGAGATAATGACTGCGGGGACCACAGTGACGAGGATGGCTGCaTGTTGCCGACCTGCTCCCCCCTGGACTTCCACTGTGATAACGGGAAGTGTATCCGGCGCTCGTGGGTGTGTGATGGAGACAACGACTGTGAGGATGACTCGGATGAGCACGACTGCCctccaCGTGAGTGTGAGGAGGATGAGTTCCACTGTCAGAACGGGTACTGTATCCGCAGCCTGTGGCACTGCGATGGAGACAACGACTGCGGAGACAACAGTGATGAACAGTGTGacATGAGGAAGTGTTCGGATAAGGAGTTCCGCTGTTCAGACGGTAGCTGTATAGCCGAGCACTGGTACTGCGATGGAGACACGGACTGCAAGGACGGAACAGACGAGGAAAACTGCCCCTCAGACCTGCTGACGGCCACCTGCAGTGTTGAGGAGTTCCAGTGTGCGTACGGCCGCTGCATTCTGGACATTTACCACTGCGACGGAGACGACGACTGTGGAGACTGGTCTGATGAATCAGACTGCTcttcaCACCAGCCGTGTCGCTCGGCTGAGTTCATGTGCAGCAGTGGGATGTGCATCAATGCAGGCTGGAGGTGTGATGGAGAGTTTGACTGTGACGATCAATCAGACGAGAGCAACTGCACGATCTCGATGTGTATGGCGGATCAGTTTCGCTGTGCGTCGGGACGGTGTGTGCGGTTGTCATGGCGATGTGATGGTGAGGATGACTGCTCTGATGGCAGTGATGAAGAAGGCTGTGAAAAGACAGGAGCTCCTCCTTGTGCATCTGATCAGTTCCTGTGTGGAAACAGACGCTGCATCGGTCAGCGCAAAGTGTGTAATGAAGTAAACGACTGTGGAGACGGAACAGATGAACATCCACACCAAGACTGCCgtcccAGGTCCACTGAAGGGAACTGCAACGTGGGTAACGGCGGCTGCTCTCAGAAGTGTTTGATGAGCCGCGGTTTAGTGCAGTGCTCCTGCCACACTGGATACAAACTCTCAGACGATGGAAAAACCTGCCaagATGTGGACGAGTGTGCGAATGAGGGATACTGCAGTCAGGGCTGCACCAACACTGAGGGGGGGTTCCAGTGCTGGTGTGTTCAAGGCTACGAGCTCCGGCCCGATAAGCGCAGCTGTAAAGCTCTGGgtccgGAGCCGGTGCTGTTGTTTGCGAATCGGATTGATATCCGGCAGGTGTTGCCGCACCGCTCTGAGTACACCCTTCTGCTCAACAATCTGGAGAACGCCATCGCACTCGACTTCCACCACAGCAGAGAGCTGGTGTTCTGGTCGGACGTCACTCTGGACCGAATCATGAAGGCCAACCTGAACGGCAGTAACGTGGAGGAGGTGGTGTCTACTGGACTGGAAAGCCCAGGTGGTCTGGCCATCGACTGGATCCATGATAAGCTGTACTGGACGGATTCGGGAACGTCTCGGATCGAGGTGGCTAATCTGGACGGGACGCACCGTAAGGTTCTGATATGGCAGAGTATGGAGAAACCACGCGCAATCGCTCTGCACCCCATCGAAGGAAAGATCTACTGGACAGACTGGGGCAACACCCCCCGTATTGAGTACTCCAACATGGACGGATCCGGTCGCAGAATCATCGCAGACACTAACCTGTTCTGGCCCAACGGACTGACCATCGACTACGCTGGACACCGCATGTACTGGGTGGATGCCAAGCACCACGTCATCGAGAGGGCCGACCTGGACGGAAAGAACCGGAAAGCCGTCATCAGCCAGGgtctTCCTCATCCGTTTGCCATCACAGTGTTTGAGGATAGTCTGTACTGGACCGACTGGCACACCAAAAGCATCAACAGCGCCAACAAATTTACTGGGAAAAACCAGGAGATCATCCGCAACAAGCTTCACTTCCCCAtggacatacacacactgcaccctCAGAGACAGCCTGCAGGTGGTCGTAATCGCTGTGGGACGAATAATGGCGGCTGTAGTCACCTGTGCCTCCCCAGTAGTAAAGCGTTTACCTGTGCCTGTCCCACAGGCTTCAAAAAGGTGGACCAGTACAACTGTGCCCTGAGTCTTGACAAGTTCCTGCTTTTTGCCCGAAGGACGGACATCCGTCGGATCAGCTTCGACACCGAGGACATGTCGGATGACGTCGTCCCCCTGGCGGACGTCCGTAACGCCGTGGCGCTGGACTGGGACTCAAAAGACGGTCATATTTACTGGACCGACGTCACCACCGACTCCATCAGCCGCGCTCTGTGGAACGGATCCAAACAGGAGGTCAGTCAGACTGGCTTACTTTACTGCACAGCTCTTTTACAGAGTctttagaaatgattcagtg

Function

GO: NA

KEGG:

id description
K20051 LRP4, MEGF7; low-density lipoprotein receptor-related protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53876 lncRNA upstream 40637 2070099 ~ 2078006 (+) True G39922
TU53868 lncRNA upstream 96045 2022183 ~ 2022598 (+) True G39914
TU53749 lncRNA upstream 148435 1928950 ~ 1970208 (+) True G39846
TU53704 lncRNA upstream 165737 1910966 ~ 1952906 (+) True G39826
TU53751 lncRNA upstream 185831 1932146 ~ 1932812 (+) True G39848
TU53899 lncRNA downstream 141748 2377506 ~ 2377822 (+) True G39942
TU53904 lncRNA downstream 153280 2389038 ~ 2390639 (+) True G39945
TU53905 lncRNA downstream 153280 2389038 ~ 2389322 (+) False G39945
TU53906 lncRNA downstream 154158 2389916 ~ 2391562 (+) True G39946
TU53913 lncRNA downstream 179014 2414772 ~ 2419056 (+) True G39952
XM_022669489.1 mRNA upstream 170221 1882803 ~ 1948422 (+) False mapk8ip1
XM_007236233.3 mRNA upstream 170221 1898928 ~ 1948422 (+) True mapk8ip1
XM_007236235.3 mRNA upstream 246713 1865392 ~ 1871930 (+) False slc35c1
XM_007236234.3 mRNA upstream 246713 1866416 ~ 1871930 (+) True slc35c1
XM_022670138.1 mRNA upstream 282259 1809602 ~ 1836384 (+) True LOC103030943
XM_007238866.3 mRNA downstream 146295 2382053 ~ 2388088 (+) False LOC103031990
XM_015602896.2 mRNA downstream 146303 2382061 ~ 2388088 (+) True LOC103031990
XM_007238867.3 mRNA downstream 156357 2392115 ~ 2406388 (+) True LOC103032316
XM_022670140.1 mRNA downstream 361934 2597692 ~ 2738656 (+) True LOC103029230
XM_007237229.3 mRNA downstream 565260 2801018 ~ 2861383 (+) True kiaa1024
TU53708 other upstream 332122 1783424 ~ 1786521 (+) False muc2
TU53709 other upstream 332407 1783424 ~ 1786236 (+) False muc2
TU53710 other upstream 333550 1781482 ~ 1785093 (+) False muc2
TU53705 other upstream 334299 1783424 ~ 1784344 (+) False muc2
TU53707 other upstream 335983 1779691 ~ 1782660 (+) False muc2
TU53987 other downstream 454209 2689967 ~ 2811496 (+) False LOC103029230
TU53995 other downstream 499838 2735596 ~ 2738217 (+) False LOC103029230
TU54378 other downstream 1898752 4134510 ~ 4135585 (+) True G40318
TU54660 other downstream 3072788 5308546 ~ 5310807 (+) False snrpa1
TU54910 other downstream 4297607 6533365 ~ 6533674 (+) True G40756

Expression Profile