RNA id: XM_022669503.1


Basic Information

Item Value
RNA id XM_022669503.1
length 3236
RNA type mRNA
GC content 0.55
exon number 20
gene id arnt2
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 3122592 ~ 3277613 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGCGCGCGGTAATGTATGCAGGCTGAAGTCTCGCGGTGTTTCCGCACCTTTCAGACATCTTGCGTTATTTTTTCTGTAGCGAAGCTCCGCAGCAGCAGAGCCAGGGCTCCGTACAGCAGGGCGGCACggccatcaacccacacagccCGCGGTAAACACCCGCCCGCCCCTCCTACACCCTCCGCCCCGCGATCGGGCGGCTCGAGCTGCTGGCCCGGAGCTCGCCACTCGCTGCGTGCGTCACCACCGTCCAGATCCCCGGGCTTACCgacgccgccgccgccgctgctgttattattgttgtgtCCGTTTTTCTCCGGCGAGCAGCGGAGCATGGCGACCCCCGCCGCGGTGAACCCCTCCGAGATGGGCACAGATCTACCCGGGCCTGTGACCATGGCAGGAGCTGTGGCAGGACAGGTCAGAATGGCGGGCACTATGCCAGGACGAGGGGGCAAGAGGAGATCATCTGGGATGGACTTTGACGATGAAGATGGAGAGGGACCAAGCAAATTTTCAAGgTATGACGATGATCAAATTCCCGCTGATAAGGAGCGCTATGCCAGagagaaccacagtgagataGAGCGACGCAGGCGCAACAAGATGACGCAGTACATCACAGAGCTGTCGGATATGGTGCCCACCTGCAGCGCGCTGGCCAGAAAACCAGACAAGCTGACCATCCTGCGCATGGCCGTGTCGCACATGAAGTCCATGAGGGGGACGGGGAACACGTCAACGGATGGAGCCTACAAACCCTCCTTCCTCACCGAGCAGGAACTGAAGCACCTGATCCTGGAGGCGGCTGACGGCTTCCTGTTCGTGGTGGCGGCGGAGACGGGCCGGGTGATCTACGTCTCGGACTCGGTGACGCCCGTCCTGAACCACCCGCAGTCCGAGTGGTTCGGCAGCACCCTGTACGAGCAGGTCCACCCGGACGACGTGGACAAACTGCGGGAGCAGCTCAGCACCTCCGAGAACTCTATGACTGGTCGAATCCTGGATCTGAAGACGGGGACGGTGAAGAAGGAGGGGCAGCAGTCCTCTATGAGGATGTGTATGGGCTCCAGGCGCTCCTTCATTTGCAGAATGAGgtGCGGCAGTGCTCCACTGGATCACATCTCCCTCAACCGCCTGTCCAACATGAGGAAGAGATACAGGAACGGTCTGGGCCCGTCTAAAGAAGGAGAAGCGCAGTATTCTGTGGTGCACTGCACTGGATACATCAAGGCTTGGCCACCAGCAGGAATGACGATCCCCGAGGAGGACACCGAAGCCGGGCAGACCAGCAAATACTGCCTGGTGGCCATTGGAAGACTGCAGgtgACCAGTTCTCCAGTTTCAATGGACATGAATGGGCTCTCAGTGCCGACAGAATTTCTGTCCCGCCACAACTCGGATGGCATCATCACCTTTGTGGACCCCCGCTGCATCAACGTGATTGGCTACCAGCCTCAGGACCTGCTTGGTAAAGACATTCTGGAGTTCTGCCATCCTGAGGATCAAAGCCACCTGAGAGAAAGCTTCCAGCAGGTGGTGAAGCTGAAAGGTCAGGTGCTGTCAGTGATGTATCGGTTCCGGATGAAGAACCGCGAGTGGATGCTGATCAGAACCAGCAGCTTCACCTTCCAGAACCCGTATTCTGACGAGATCGAGTACATCATCTGCACCAACACCAACGTCAAgcagcttcagcagcagcagcaggcggAGCTGGAGGTGCATCAGAGGGACGGACTGACAGCATATGATTTGTCAcagCAGGTACCAGTGGGCGGCGTGCCAGGTGGCGTCCATGAGGCCAGCAAGACCATCGACAAGACGGAGACACTTTTCTCTCAGGAGAGAGACCCGCGCTTCAGCGACATGTACACAGGCATCTCCGGCTctgatAAGAAGATGATGGTACCCTCATCCACTGCTGGGGGTCAGCAGCTATATTCCCAGGGCAGTCCTTTCCAACCCGGCCATTCAGGCAAAAGTTTCAGctcATCAGTGATCCACGTTCCCGGAGTGAATGATATCCAGTCCTCAGCCGGAACAGCTGGTCAGAACCTGGCCCAGATCTCCAGACAGCTTAACCCAGGTCAGGTGTCCTGGACAGGCAGCAGACCACCCTTCTCCGGACAGCAGCAGCTCCCAGCTCAGTCCAGCAAAGCCCAGTCGTCTCCCTTCGGCATCGGCTCCAGCCACAGCTATCAGGCCGACCCGTCCTCATACAGCCCACTGTCCAGCCCAGCCACTTCCTCCCCCAGCGGCAACGCCTACTCCAACCTGGCCAATCGCAGCACTGCTTTCGATGTGTCCGGGGAGAGCAGTCAGAGTGGTGGTCAGTTCCAGGGCCGGCCGTCTGAAGTGTGGTCTCAGTGGCAGAGTCAGCATCACAGCCAGCAAACCGgagaacagcacacacacacccagcccAGCCAATCCGAGGTGTTCCAGGATATGCTGCCCATGGCTGGTGACCCCACCCAGGGAACGGCCAACTACAACATCGAGGACTTCGCCGACCTCGGCATGTTCCCGCCGTTTTCCGAGTAAACTGGcttggatctttttttttttttttttttttttttgaagggtgatctgtttttttttttttttcttccacaaTACTGCAGTATTGTCGTCGTTATGATCTTCATTGATTCCCCCGCCATCATCATGAgcagcatcatcatcagcatcatcatcagtaTCATCATCAGTATCATCAGTTGCACTCAATGCACATCGGCAGTCCTGCATAGATGTTTGGAATGCACACAGTTCGTACTTTGGACCTTGTTGACTGGTtatccaccacacacacacacacacacacacacacacactctttctcccaTATCCAAACAGTCCTTCTGTCAGGGCTGGTTTTGCACAGATAGGTGAGTATCCTGCGAGAGGATACGACGTGGACTGTCTGTTTCGACACGTTACCGTGTTTTTCCCGGAACGAGAAGAGATGTTTAATGGTTCagcatgtgtgagtgtgtgcggacccccccaacccccctccTCGACTCACTAACTGACGGAGGAACCTCGTTGAGAACTCCGAGAACTGACCTGCCGAGATCATTGCACCAGCATAACCCGATGCAGCATTTCGCTTACTGTGAAAAGTATAGTCTATGTAGTGATGTCCATAATGATATTAGCTAATGAACTAATAATACTAGTGGtagattgatatatatatatatatatatatatatatatatata

Function

GO: NA

KEGG:

id description
K15589 ARNT2; aryl hydrocarbon receptor nuclear translocator 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54026 lncRNA upstream 79961 3042404 ~ 3042631 (+) True G40035
TU54018 lncRNA upstream 119422 2959858 ~ 3003170 (+) True G40030
TU54005 lncRNA upstream 287566 2832705 ~ 2835026 (+) True G40018
TU54001 lncRNA upstream 312059 2807150 ~ 2810533 (+) True G40014
XR_002650014.1 lncRNA upstream 328777 2792540 ~ 2793815 (+) True LOC111192560
TU54107 lncRNA downstream 66 3277679 ~ 3278297 (+) True G40093
TU54108 lncRNA downstream 66 3277679 ~ 3278273 (+) False G40093
TU54128 lncRNA downstream 105029 3382642 ~ 3401938 (+) True LOC103025846
TU54131 lncRNA downstream 105699 3383312 ~ 3427487 (+) True G40113
TU54129 lncRNA downstream 121903 3399516 ~ 3487173 (+) True G40112
XM_007258155.3 mRNA upstream 80492 3008334 ~ 3042100 (+) True fah
XM_015608092.2 mRNA upstream 116267 2986368 ~ 3006325 (+) False zfand6
XM_022670141.1 mRNA downstream 105066 3382679 ~ 3399314 (+) False LOC103025846
XM_022669508.1 mRNA downstream 151869 3429482 ~ 3645688 (+) True cemip
XM_022669509.1 mRNA downstream 151869 3429482 ~ 3645688 (+) False cemip
XM_007258148.3 mRNA downstream 384062 3661675 ~ 3665106 (+) True tlnrd1
XM_022669511.1 mRNA downstream 413105 3690718 ~ 3750084 (+) False il16
TU53987 other upstream 311096 2689967 ~ 2811496 (+) False LOC103029230
TU53995 other upstream 384375 2735596 ~ 2738217 (+) False LOC103029230
TU53708 other upstream 1336071 1783424 ~ 1786521 (+) False muc2
TU53709 other upstream 1336356 1783424 ~ 1786236 (+) False muc2
TU53710 other upstream 1337499 1781482 ~ 1785093 (+) False muc2
TU54378 other downstream 856897 4134510 ~ 4135585 (+) True G40318
TU54660 other downstream 2030933 5308546 ~ 5310807 (+) False snrpa1
TU54910 other downstream 3255752 6533365 ~ 6533674 (+) True G40756
XR_001518717.2 other downstream 4548910 7826523 ~ 7826914 (+) True LOC107197696
TU55733 other downstream 6718140 9995753 ~ 10005398 (+) False LOC103037553

Expression Profile