RNA id: XM_022669514.1


Basic Information

Item Value
RNA id XM_022669514.1
length 1715
RNA type mRNA
GC content 0.57
exon number 8
gene id LOC103021590
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 4130622 ~ 4394295 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgtgcagcTAAACGCATGGCGTACCGGAAGGTGTTCGCCAGCCGCGGCAGCACCGCCATCTCTCAGGACCTGGAGAGAGAAGGGCTTCAGATGGCCTCTCTGGATATGGAGtgggagatggagaaagagctggAGGAGCCAGGAGGCCTGGACCACTTCCAGCTGGAGTGTGTGGAGCACCAGCCCATGGAAACCTCGTCCAGCGGGGCCATGGATCCGGACCTGGAGCCCATCCAGCCCTCCGCGTCCCCCCACGGCCGGTTCCAACGGCTGCAGGAGGACCCCAACTACACCTCCCATTTCAGCAGGACTATGCCCAAGAGCCAGAGGAGGAGCGGGGCATGCATAGCCAAATACCTGCTGGCTGGAGCAGGGGTGTTTTTTCTTGGACTGCTCATTGGCCTGTACACCCACAGGGCGGAGAAACAGCCGGAAATATCCAATCAGAGCACAGACTTGCTGGAAAGGGTCGTCCAGAGCATCACTGCAGAGAAGATCCAGGCACTACAAAGGGAATTCCAAGCCACGACCAGTGAGGAGGATCGAGTGAAAGGCCTCGCCCAGAAATGGGAGGAGCTGGGCCTGAAGAACGTCCAGCTGTCCAGTTACAACGTCCTCCTCAGCCATCCCGGCCCCAGGCCCAACACAATCGTTGACATGACCACTAAGCATTGTTACCTGCCCAGCGGACACAGCTGCGACACCTGGGGCAATCCATCATATTCTACTGAGCAGCTCTTTGCCATGGCGACCTACTCGGCCGTGGGGACTCTGGAGGCGGAGGTGGTGGACGTACAGTATGGAAGTTCTGAAGATTTGAGGCGGATCAGAGCTGAGATGAATGTGACCAATAAAATAGCTGTACTAAAGCTGGGACAAGCACCTTTACTCTATACGCTGTCCCGTTTGGCTGAGATGGGCTTTGGAGGTTCTCTTCTGTATGTGGAACCCTGTGATGTCATCACAGAGCAGGAAATATGGTGGAAAGCCTTTGGTGTGACATTAAACCCAGGAGGAGACCCCTCCACTCCAGACTACCCCAGCACTGACAGGAGCTACAGGGCGGACCGTCGCAATCTGACATCACTGCTGGTTCAGCCAATCTCTACCTCCCTAGCTAAAGTGCTGCTGTACGCCCCTGCCATGGGCATCGGTCGACCCTGCGTTCCTCTGGCCATGACGCCACCCTCAGAACGGAAGATTGTAAATCTCACCATCGGCTCTCAAACTTCCTATGGGAAAGTGCACAATGTGGTCGGCTACCTGAGAGGCAAGATTAATCCAGATCGATACGTGCTGGTTGGGGGTCGTCACAGCAGCTGGTACGAGGGCACCGCGGCAGACTGGAGTGGCAGCGCCGCTGCCGTGACTCAGATCATAGAGTCCATCACAGCTCAGGCCCGAGCAGGCTGGCAGCCGGACCGTACCATCGTCTTCTGCTCGTGGGGGGGATCTGCGCTGGGCAACATCGGCTCCTTTGAATGGGGGGAGGAGAACAGACTGGTTCTGGAGAGCAGGGCAGTGGCTTATGTCAGCCTGCACAGTCCAGTCAGACCACGAGGACCCCAGTCCACCGCGTCCCCCTCTCTACTGCAGCTGGCCTCAGACATCGGCAAGGTAAACCccaccccccaacacacaccttattCCACCTTACTCACATCTTAATCTGAGAGAATTAACCATACACATATtatgtacaccttaatgctact

Function

GO: NA

KEGG:

id description
K01301 NAALAD; N-acetylated-alpha-linked acidic dipeptidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54365 lncRNA upstream 74252 4055842 ~ 4056370 (+) True G40308
TU54359 lncRNA upstream 131676 3998686 ~ 3998946 (+) True G40303
TU54358 lncRNA upstream 132069 3998205 ~ 3998553 (+) True G40302
TU54357 lncRNA upstream 133622 3996546 ~ 3997000 (+) True G40301
TU54353 lncRNA upstream 142255 3987512 ~ 3988367 (+) True G40298
TU54444 lncRNA downstream 14325 4408620 ~ 4408861 (+) True G40375
TU54458 lncRNA downstream 83576 4477871 ~ 4495735 (+) True G40388
TU54463 lncRNA downstream 120946 4515241 ~ 4515611 (+) False LOC103046723
TU54462 lncRNA downstream 121780 4516075 ~ 4531846 (+) True G40392
TU54473 lncRNA downstream 178158 4572453 ~ 4572730 (+) True G40402
XM_022670143.1 mRNA upstream 274148 3837507 ~ 3856474 (+) True LOC103044341
XM_022669511.1 mRNA upstream 380538 3690718 ~ 3750084 (+) False il16
XM_007258145.3 mRNA upstream 380538 3690719 ~ 3750084 (+) True il16
XM_007258147.3 mRNA upstream 380538 3690719 ~ 3750084 (+) False il16
XM_022669512.1 mRNA upstream 380540 3718336 ~ 3750082 (+) False il16
XM_007258141.3 mRNA downstream 40257 4434552 ~ 4490598 (+) True LOC103022507
XM_007258142.3 mRNA downstream 40257 4434552 ~ 4490598 (+) False LOC103022507
XM_022669515.1 mRNA downstream 110102 4504397 ~ 4515385 (+) True LOC103046723
XM_022669518.1 mRNA downstream 140939 4535234 ~ 4689998 (+) False LOC103028701
XM_022669516.1 mRNA downstream 140940 4535235 ~ 4744552 (+) True LOC103028701
TU53987 other upstream 1319126 2689967 ~ 2811496 (+) False LOC103029230
TU53995 other upstream 1392405 2735596 ~ 2738217 (+) False LOC103029230
TU53708 other upstream 2344101 1783424 ~ 1786521 (+) False muc2
TU53709 other upstream 2344386 1783424 ~ 1786236 (+) False muc2
TU53710 other upstream 2345529 1781482 ~ 1785093 (+) False muc2
TU54660 other downstream 914251 5308546 ~ 5310807 (+) False snrpa1
TU54910 other downstream 2139070 6533365 ~ 6533674 (+) True G40756
XR_001518717.2 other downstream 3432228 7826523 ~ 7826914 (+) True LOC107197696
TU55733 other downstream 5601458 9995753 ~ 10005398 (+) False LOC103037553
trnar-ucg_1 other downstream 5898042 10292337 ~ 10292409 (+) True trnar-ucg_1

Expression Profile