RNA id: XM_022669516.1


Basic Information

Item Value
RNA id XM_022669516.1
length 5057
RNA type mRNA
GC content 0.57
exon number 28
gene id LOC103028701
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 4535234 ~ 4744552 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tcatctctgtctctctctctctcacgcccCCCGTTCAGCGAGcggcagcaacagcagcagctctcaCAGCTCGTGCACCGACCGTCCCAGCAGCACATCTGCCCTGCGAACACATCTGCACCGCGCGCATCTGCTGCGCATTTCCACAGCACTTCAGCGCGCGCTCCGTCCTGCGTTGGGAAAATGGAAATCCTCCAGCCTGAGTTTGCAGGGAGAGGCTGATATCACACTGTAGGCACACTCAGGCTTCCAGGCTGGAGCGGAGCGACGGCGCGAAAATGGAGCTGTCACTTTGCTGCGTGTGGCGGATCAGCGTTGCTCTCGCGCTCATGGCGTCTGGCGCTCAGGGGGAACCGAGCGATTCTCAGAGTGCGTACTTCCTGCCGGAGTTTGCACTCTCTCCACAAGGAAGCTTTCTAGAGGACACCACAGGGGAGCAGTACCTCACGTACCGCTATGATGATCAGTCCTCAAGAACTACTCGTTCAGATGAAGACCGGGACACGGGTTGGGACGCTTGGGGAACCTGGAGCGACTGTTCGCGTACCTGTGGGGGCGGAGCCTCCTATTCTCTCCGCAGATGTCTGAACGGAGGGAATTGCGAGGGAAGGAACATCCGTTACAGGACGTGCAGCAACACTGACTGCCCTGCAGAGTCAGGTGACTTCAGAGCTCAGCAGTGCTCCGCCCACAATGACATCAAATACCACGGACAGACCTATGAGTGGATTCCTGTGAGTTATGACCCGGTCTCTCCGTGCGCACTGAGGTGCCAGGCCCGTGGGAAGAGCCTGGTGGTGGAACTCGCGCCCAAAGTGCTGGATGGCACTCGCTGCAAAACGGACTCTCTGGACATGTGTATAAACGGAATCTGCCAGGAAGTGGGCTGTGACAGACAGCTGAGCAGCAATGCTAAGGAGGATAACTGCGGAGTGTGTGCTGGAGACGGCTCCACGTGCCAGCTGGTCAGAGGCCAGGCGCTGACCCACGTTACTCCAGATGAACCGATGAAGACTGTGATTGAGGTGCCGCTGGGCAGCCGAAACCTGCGACTGACTGCCAAGGGGTCAGACATTATAGTGATCGAGGCTCACAGTCCTGCTGGCAGGAGGGATGAGCTGGTCTTCAGCTCTACAGGTTCGTACACACTGGCCGACACCACTGTGGACTTCCAGAGAGGAACCGAGAGACAGACCCTCCGTTGCCACGGACCCCTGTCCTCAGATTTCATCATCAAGCTGAAGTATGCAGTGCCCAAAGACACAGTGATGCAGTTCATGTTCTACCAGCCCATCCGCTACCagtggagagagacagacttcTTCCCCTGCTCTGTTACCTGTGGAGGAGGCTACCAGCTGAACTCGGCCGACTGCGTAGAAATCCGCTACAACAAGACCGTGCCGGACCACCACTGCCACTCCTACCCAGAGAACAACAAACCAAAGCCCAAACTGAAGGAGTGCAACATGGACCCCTGCCTCGAAAGTGACGGGTTCAAGGAGGTGATGCCCTACGATCATTTCCAGCCTCTTCCACGgtgggAGCAGAACCCCTGGACCTCATGCTCTGTCTCCTGCGGTGGGGGGTCTCAGCAGCGCTCGGTGGTGTGCGTGGAGGAGGATATGcaggggcaggtggtgcaggtGGAGGAATGGAAGTGCACACATTCGCCCCGGCCAATCACAGAACAGCCCTGCAACACCTTCGACTGCCCCAAATGGGTCGCGATGGAGTGGtctcagTGTACGGTGACGTGTGGTCGGGGTTTACGGTACCGTGTGGTTCTCTGTATTGACCACAATGGGCAGCACACtggcggctgcagctccagcctCAAACCCCACATTAAAGAGGACTGCCTGGTGCCCATCGCCTGCCACAAACCCAgagAGAGCGTACCTGTAGAGGCCAAACTGCCGTGGCTAAAACAAGCCCAGGAGCTGGAGGAGACCAAAGTAGCCACAGAGGACCCAACgttcATCCCAGGCCCCTGGTCGTCCTGCAGCGTGTCGTGCGGGGTCGGACTGCAGAAGCGCTGGGTGAAGTGTAGAGTGCTGCTGTCCTTCACTCAGGCTGAGGTGGATCTGCCGGAGgaggagtgtgagggggagAAACCTGTCCTTCAGAGAACCTGCAGCATGGGCCCCTGTTCAGGCCCCGGGGGCTCCCTGCAGTGGCCTGTGGAGGTCCCGGCTAACCCCACACAGCTGGGCTTCCTATGGGAGTACCGAGGCTTCACAGCATGCAGCGTCTCCTGTGCTGTAGGCAGGCAGGTGGCCGTGGTGCGGTGTGTTCGGGCGGGGAGGCAGGAGGTGGTGGAGGACTTTTTCTGTGATGAGTTGAGGAGACCCCCTGCCATGGTCCGCATCTGCAACCCTCAGCCCTGCCCTGCCAGATGGGATTTCAGCGAGTGGTCTCAGTGTTCGGAGTCGTGTGGTGTGGGGCTGCAGACACGCCGTGTGCGGTGTGTGAGGTCAGTGGGGAGTAACCTCACAGAGTCAGTGGAGTTATCAGAGTGCAAAGGGAGCAGACCACCAGAGCTACAAGCCTGCAACCAGCACCACTGCCCACCGGCCTGGGAGGCTGAAGAGTGGCAGCAGtgcTCTCACGCGTGTGTGAGGGGGACGCAGTGGAGGAAGGTGTACTGCAGGCAGCGTCTGGCTGGGGGGAGCTTCCGGAAGCTTCCTGATGAAGAGTGTGACGGTGTTAAACCCGCGACACAGCGGCCGTGCACCGACCCACTCTGCCTACAGCCACACCTGGACGGAGGGGAGTGGTCCAAGtgttcTGTGACCTGTGGGAAGGGGATTCAGCGCAGGGAGCCTGTGTGTCGGAGGTTGAGTGTTTCTGGTCAGCTGGTCACTCTGGACAGGTCTGCCTGTAATGGCCTGCAGCCCCCACCCCTCATCAGGAGCTGCCGCATGACCCCCTGCAACAAGCACAAGTACTCCAAGAAGCGATGCCCTCAGGTTCTGGGCCTGAAACGCATCTACATCCAGACGAGGCAGGAGAAGAGGCTGAGCTTCACCATCGGTGGACGAGCTTACCTTCTTCCAAAGACGTCCGTCGTCATCAAATGTCCAGTGCGCCACTTTCCCAAAGCCCAGATCCGCTGGGAAAAGGATGGCCAGGACCTCCAGAACTCCAAACATCTGAGCATCACCAAGTCTGGAGCTTTGAGGCTGTACAGCCTAGAGACCAGGGACATCGGCGAGTATCGCTGCTGGGCCAACCAGGCCTCAGACATCTTCATCCTGAAACTGATAGGCCATGATAACAGGCTTCTGGAACATCCTGAAGGGAAGAGCTTGGGTAAGGAGAGGAATAACAGTGGATCCAGGACTTTCCTCAACAAGGAGGGAGGATACAATAGTGCCAAGTGTCAAGACCAGGAGGAATTCCAAATCGTCAAGAGAATCCCCAAACCAGGAAGAAGCTGGGTGCAGAAGAATGAATTTTACCTGGATGAAGGCCAACCTCAAGGAAACCCGACGGCTCTGGGGAATTCTCTTCTGGCCTCCAGTTCTTCCAGTGAATCCCTCGTTTCGGCAGCTTCTGGAGCTTTCGTTATGGAACCGTCCCAGTTCGAGGCACTGCTGAGGAACATCAGTCAGCTTGCAGAAAGTGGGGATGTGACCGATGACCTCGCTTCCCACCTTATTAGCAGGTTATTGGAAGAAATGGCAGCAGCTCAGGTCACTTCAGATAAGGAGACAACCTCTCGAGAAAGAACATCCAAAGATAAACATCTAGACAAGACCCCAAACTCCTCAGAACGCTCCGGAGGGGATCTGAGGAATTTGAAAAGCCGAGCGGTCATTGTACGTCATAAGCAGCACGGGTCCACCATGAGCTTCCAGAGGGACCTCAGGATCAGTGTTGGCCAGACCACCTACGTCACCAAGGCAACCCACAGTCTGACAATTCTCTGTCCGACTCAGGGGGTCCCTACTCCAGTTGTATCCTGGACCAAAGATGGAGCACCACTGAGAGACAGGGGATCATGGGATAGCACCGGAGGACTGCACATCTCCAACCCCGGTGCCAGGGACGCTGGGGTCTACAGGTGCACGGCCAGCAACGAAATGGGATCAGATTCGGAATCTACGCAAGTGCTGTTGGCTGAACCTCCTGCCATCACAACCTCCTCAAGGAACGTGTCTGATCTTCACAGTTCCAGTCTGAGAGTTCCAGTAGGGGGAAGAATCAGTGCTCGTTTAGGTGCCAACCTCACCCTGGACTGCCTTGTAACAGGTGTTCCTCAGCCGTTGGTGAGCTGGCACCGCTTGGAGGGTCCTCTGAGCTCCACTGCCATCCCGCTTCCAAACGCCTCCCTGCTGCTCCACAACCTCACACTGCAGGACGACGGGACCTACTGCTGCGTGGCTTCAAACCCCCTCAGCAAAGCAGTTTCATCCAGCATCATCCACGTAACAGCAGGGGCGGAGCAGAAGGAGCTGAACAGGAAGCGAATGGTGATGGCCTCTCGGATCGGCACCGTCATCACCGTCACACAGGGGGATATTCTGAGAATAGGCTGTCCTGTCGTTTCCAGTCACAGAAAACCCATTAAGTGGACGTTTCAGAACCAAACCCTGAAGCAGGGGGCGGGGCTGCGTTACCGCATGCTGGTCAGTGGTCGCGTCCTGGAGATAAACACAATGACTAGCCGCTTTAATGGACACTATGGCTGCCAAACTTATATCGATGACCAGCTTGTTTCTGCCTGGATTCACGTTCTTTCACAAGAGTTTGAGTGGCGTTTGGGGGAATGGAGCGTGTGCAGTGCGAGCTGTGGGAACAGAGGATCTCAGATAAGAAAGGTCCGCTGTGTCGGAGCCGACGGGCAGGAAACACAACCGTCCTCCTGCCAGAACCGACCCAGACCAGCGTCCCCTCCCACGACCCTGCAACCTCAACCACTGCCCACCCAGCTGGGTGTCCACGGTCTGGTCTAAATGCTCGTCGTCGTGTGGTCGAGGTGTGCGGCAGAGGCAGGTGTCGTGTCAGCGTTTGGAGGCCAGTGGCAGCATGCGGGTGTTACCCAGCTCTGA

Function

GO: NA

KEGG:

id description
K24429 ADAMTSL1_3; ADAMTS-like protein 1/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54462 lncRNA upstream 3389 4516075 ~ 4531846 (+) True G40392
TU54463 lncRNA upstream 19624 4515241 ~ 4515611 (+) False LOC103046723
TU54458 lncRNA upstream 39500 4477871 ~ 4495735 (+) True G40388
TU54444 lncRNA upstream 126374 4408620 ~ 4408861 (+) True G40375
TU54401 lncRNA upstream 194100 4339955 ~ 4341135 (+) True G40333
TU54495 lncRNA downstream 169337 4913889 ~ 4915973 (+) True G40424
TU54496 lncRNA downstream 169337 4913889 ~ 4915973 (+) False G40424
TU54583 lncRNA downstream 318097 5062649 ~ 5062903 (+) True G40504
TU54609 lncRNA downstream 388978 5133530 ~ 5163329 (+) True G40511
TU54595 lncRNA downstream 403073 5147625 ~ 5154524 (+) True G40510
XM_022669515.1 mRNA upstream 19850 4504397 ~ 4515385 (+) True LOC103046723
XM_007258141.3 mRNA upstream 44637 4434552 ~ 4490598 (+) True LOC103022507
XM_007258142.3 mRNA upstream 44637 4434552 ~ 4490598 (+) False LOC103022507
XM_022669514.1 mRNA upstream 140940 4130622 ~ 4394295 (+) True LOC103021590
XM_022670143.1 mRNA upstream 678761 3837507 ~ 3856474 (+) True LOC103044341
XM_022669519.1 mRNA downstream 17641 4762193 ~ 4933029 (+) True efl1
XM_007258133.3 mRNA downstream 257213 5001765 ~ 5006585 (+) True mex3b
XM_022669521.1 mRNA downstream 561135 5305687 ~ 5310922 (+) False snrpa1
XM_022669523.1 mRNA downstream 568088 5312640 ~ 5320139 (+) True selenos
XM_007260216.2 mRNA downstream 583676 5328228 ~ 5424313 (+) True chsy1
TU54378 other upstream 399650 4134510 ~ 4135585 (+) True G40318
TU53987 other upstream 1723739 2689967 ~ 2811496 (+) False LOC103029230
TU53995 other upstream 1797018 2735596 ~ 2738217 (+) False LOC103029230
TU53708 other upstream 2748714 1783424 ~ 1786521 (+) False muc2
TU54660 other downstream 563994 5308546 ~ 5310807 (+) False snrpa1
TU54910 other downstream 1788813 6533365 ~ 6533674 (+) True G40756
XR_001518717.2 other downstream 3081971 7826523 ~ 7826914 (+) True LOC107197696
TU55733 other downstream 5251201 9995753 ~ 10005398 (+) False LOC103037553
trnar-ucg_1 other downstream 5547785 10292337 ~ 10292409 (+) True trnar-ucg_1

Expression Profile