Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_022669529.1 |
| length | 1262 |
| RNA type | mRNA |
| GC content | 0.54 |
| exon number | 11 |
| gene id | lims1 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_035901.1 |
| NCBI id | CM008304.1 |
| chromosome length | 40584741 |
| location | 5814514 ~ 5836087 (+) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| species | mexican tetra (Astyanax mexicanus) |
| id | name | namespace |
|---|---|---|
| GO:0051896 | regulation of protein kinase B signaling | biological_process |
| GO:0060047 | heart contraction | biological_process |
| GO:0030018 | Z disc | cellular_component |
| GO:0014704 | intercalated disc | cellular_component |
| GO:0008270 | zinc ion binding | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU54748 | lncRNA | upstream | 64802 | 5749131 ~ 5749712 (+) | True | G40617 |
| TU54674 | lncRNA | upstream | 355890 | 5445193 ~ 5458624 (+) | True | G40556 |
| TU54663 | lncRNA | upstream | 502170 | 5308546 ~ 5312344 (+) | True | snrpa1 |
| TU54611 | lncRNA | upstream | 651185 | 5158991 ~ 5163329 (+) | False | G40511 |
| TU54802 | lncRNA | downstream | 5468 | 5840554 ~ 5840773 (+) | True | G40660 |
| TU54837 | lncRNA | downstream | 229312 | 6064398 ~ 6064642 (+) | True | G40692 |
| TU54840 | lncRNA | downstream | 256785 | 6091871 ~ 6092282 (+) | True | G40695 |
| TU54842 | lncRNA | downstream | 259223 | 6094309 ~ 6129206 (+) | True | G40697 |
| TU54854 | lncRNA | downstream | 362873 | 6197959 ~ 6198236 (+) | True | G40709 |
| XM_022670144.1 | mRNA | upstream | 35240 | 5762651 ~ 5779274 (+) | True | adamts17 |
| XM_007237231.3 | mRNA | upstream | 64149 | 5722889 ~ 5750365 (+) | False | cers3 |
| XM_007237232.3 | mRNA | upstream | 64149 | 5728545 ~ 5750365 (+) | True | cers3 |
| XM_007237230.3 | mRNA | upstream | 64149 | 5728545 ~ 5750365 (+) | False | cers3 |
| XM_015602438.2 | mRNA | upstream | 64149 | 5728545 ~ 5750365 (+) | False | cers3 |
| XM_007252577.2 | mRNA | downstream | 1042686 | 6877772 ~ 7013787 (+) | True | pcdh17 |
| XM_015606694.2 | mRNA | downstream | 1042686 | 6877772 ~ 7013787 (+) | False | pcdh17 |
| XM_007252576.3 | mRNA | downstream | 2267189 | 8102275 ~ 8162958 (+) | True | xxylt1 |
| XM_022669536.1 | mRNA | downstream | 2526751 | 8361837 ~ 8377825 (+) | True | lsg1 |
| XM_022670142.1 | mRNA | downstream | 2547170 | 8382256 ~ 8400857 (+) | True | tmem44 |
| TU54660 | other | upstream | 503707 | 5308546 ~ 5310807 (+) | False | snrpa1 |
| TU54378 | other | upstream | 1678929 | 4134510 ~ 4135585 (+) | True | G40318 |
| TU53987 | other | upstream | 3003018 | 2689967 ~ 2811496 (+) | False | LOC103029230 |
| TU53995 | other | upstream | 3076297 | 2735596 ~ 2738217 (+) | False | LOC103029230 |
| TU53709 | other | upstream | 4028278 | 1783424 ~ 1786236 (+) | False | muc2 |
| TU54910 | other | downstream | 698279 | 6533365 ~ 6533674 (+) | True | G40756 |
| XR_001518717.2 | other | downstream | 1991437 | 7826523 ~ 7826914 (+) | True | LOC107197696 |
| TU55733 | other | downstream | 4160667 | 9995753 ~ 10005398 (+) | False | LOC103037553 |
| trnar-ucg_1 | other | downstream | 4457251 | 10292337 ~ 10292409 (+) | True | trnar-ucg_1 |
| trnam-cau_21 | other | downstream | 4920123 | 10755209 ~ 10755281 (+) | True | trnam-cau_21 |
