RNA id: XM_022669530.1


Basic Information

Item Value
RNA id XM_022669530.1
length 2128
RNA type mRNA
GC content 0.45
exon number 10
gene id lims1
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 5814514 ~ 5836087 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tagcaggaggaggaagggcGGATTCGGAGCGGAGCAGCGCTGCTTCAGTAACCGCTGTTTTCTTTACCTGATTTTAATTCTACAGTTTAGTAGCAGCGCGGAGACTCTCCATACCCCTCCGGATTAGCGGGAGTGTGGGGGATGCTGGGGGTGGCAGAAATGACGGGCAGCAATATGGCCAATGCCCTGGCAAACGCCGCATGCGAACGGTGCAAAAGCGGCTTTGCCCCGGCAGAGAAGATCGTGAACAGTAACGGCGAGTTGTACCACGAGCAGTGCTTCGTCTGTGCACAGTGCTTTCAGCAGTTTCCTGAAGGACTTTTCTACGAGTTTGAGGGGAGGAAGTACTGTGAGCATGATTTCCAAATGCTGTTTGCCCCCTGCTGTCACCAGTGTGGAGAGTTCATCATTGGCCGTGTGATTAAAGCCATGAATAACAGCTGGCACCCCGACTGCTTCTGCTGTGATATCTGTCAGGCTGTGCTCGCTGACGTCGGATTCGTTAAAAATGCTGGACGtCATCTGTGCCGTCCGTGTCATAACCGGGAGAAAGCTCGTGGTCTGGGGAAGTATATCTGTCAGAAGTGCCACGCCATCATCGAGGAGCAGCCTCTCATCTTCAAGAATGATCCCTATCATCCGGACCACTTCAACTGCAGCAACTGTGGGAAGGAGCTGACTGCTGATGCGCGAGAGCTGAAAGGAGAGCTGTACTGTCTTCCTTGCCACGATAAAATGGGCGTGCCGATCTGTGGAGCGTGCAGACGACCTATCGAGGGCCGCGTGGTCAACGCCATGGGCAAGCAGTGGCATGTTGAAcaCTTTGTGTGCGCCAAGTGTGAGAAACCTTTCCTGGGTCATCGTCATTATGAGAGGAAGGGTTTGGCGTACTGCGAGACTCACTATAACCAGCTGTTTGGTGATGTCTGCTACCACTGCAACCGTGTGATTGAAGGCGATGTCGTGTCGGCTCTGAACAAGGCCTGGTGCGTCAACTGCTTCTCCTGCTCCACCTGCAACACCAAGCTCACCCTGAAaaacaaGTTTGTGGAGTTCGATATGAAGCCTGTGTGTAAGAAGTGCTACGAGAAGTTTCCCCTGGAGCTGAAGAAGAGGCTGAAGAAGCTGGCCGAGACCGTAGGCCGCAAGTAACCGTCCACGGCCGCGGAGCGACTCACAGATCACCGTGAAATTCCTGGTGCTTTAGAGAACCTATTCAGAGTCCGTGCATTTCTGTAGTGGAGGTAAAACACACTCGAGCCTTAAGTCCCTCATGTTACACCTCTCACTTCCTCTTACTTCCTCTCACTTTCCTCCTCTCACTGCTGCACTGCTCTCACCTCACACTTTAACTCTCTCTTAATTTACCTGATCCTCCGAGTCTGAGAAGAAGCTGAAGTTATGGAAGTGGAAGGGTAGAGCTATTAAAAAGGATTCGGCTCATCAGCTCCTCTGTTGcctttatcattatattattatgccTCTTTATTcaaggtgtatatatatatatatatatatatatatatataatatatatatattcagcatatgaaaaatttaagtaaaatattatatatggcTCTCGGTAATCAGTAGGCGGCATGTTATAGATGATTTTTAAACATCAGGACACATCTGAAGTGCTTTTCTTTGAGGAAACAGTGCTGGTTATGTTGGGGATGCACCAAAATCAAATCCTTTGGTCAAATATTAGTTCTCTACCGGAATTGAtttaattttgccattttttctaCTGTTGCATAAAGTTAATTGCCtacatatattgtttttttgtttctttgacCCACTATGGCATAATTTGATATGTTTAAGGATGAAATATGAATTTATTCATCTTTTAAGTACATTTGGACAAAGCAAACAAGCTGATAATTTTGAATTAGgtgttttaaagcatttaagatATGAGAAGTAGGATAACCCAAACCCAGAACCTGAGATTAGAGAGCattgctgcttttttatttttaatgtaataaaagtgGTCCAAAAACTGCAGAAAGTAATagacaatataaaaacacagtttcagCAGGTTTACAACAAGAATGTAAGAATGTAGTAGGaatataaacagataaatacatataaatacttcTTTACCTTT

Function

GO:

id name namespace
GO:0051896 regulation of protein kinase B signaling biological_process
GO:0060047 heart contraction biological_process
GO:0030018 Z disc cellular_component
GO:0014704 intercalated disc cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K23354 LIMS1_2, PINCH1_2; LIM and senescent cell antigen-like-containing domain protein 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54748 lncRNA upstream 64803 5749131 ~ 5749712 (+) True G40617
TU54674 lncRNA upstream 355891 5445193 ~ 5458624 (+) True G40556
TU54663 lncRNA upstream 502171 5308546 ~ 5312344 (+) True snrpa1
TU54611 lncRNA upstream 651186 5158991 ~ 5163329 (+) False G40511
TU54802 lncRNA downstream 4467 5840554 ~ 5840773 (+) True G40660
TU54837 lncRNA downstream 228311 6064398 ~ 6064642 (+) True G40692
TU54840 lncRNA downstream 255784 6091871 ~ 6092282 (+) True G40695
TU54842 lncRNA downstream 258222 6094309 ~ 6129206 (+) True G40697
TU54854 lncRNA downstream 361872 6197959 ~ 6198236 (+) True G40709
XM_022670144.1 mRNA upstream 35241 5762651 ~ 5779274 (+) True adamts17
XM_007237231.3 mRNA upstream 64150 5722889 ~ 5750365 (+) False cers3
XM_007252577.2 mRNA downstream 1041685 6877772 ~ 7013787 (+) True pcdh17
XM_015606694.2 mRNA downstream 1041685 6877772 ~ 7013787 (+) False pcdh17
XM_007252576.3 mRNA downstream 2266188 8102275 ~ 8162958 (+) True xxylt1
XM_022669536.1 mRNA downstream 2525750 8361837 ~ 8377825 (+) True lsg1
XM_022670142.1 mRNA downstream 2546169 8382256 ~ 8400857 (+) True tmem44
TU54660 other upstream 503708 5308546 ~ 5310807 (+) False snrpa1
TU54378 other upstream 1678930 4134510 ~ 4135585 (+) True G40318
TU53987 other upstream 3003019 2689967 ~ 2811496 (+) False LOC103029230
TU53995 other upstream 3076298 2735596 ~ 2738217 (+) False LOC103029230
TU53709 other upstream 4028279 1783424 ~ 1786236 (+) False muc2
TU54910 other downstream 697278 6533365 ~ 6533674 (+) True G40756
XR_001518717.2 other downstream 1990436 7826523 ~ 7826914 (+) True LOC107197696
TU55733 other downstream 4159666 9995753 ~ 10005398 (+) False LOC103037553
trnar-ucg_1 other downstream 4456250 10292337 ~ 10292409 (+) True trnar-ucg_1
trnam-cau_21 other downstream 4919122 10755209 ~ 10755281 (+) True trnam-cau_21

Expression Profile