RNA id: XM_022669536.1


Basic Information

Item Value
RNA id XM_022669536.1
length 2610
RNA type mRNA
GC content 0.47
exon number 15
gene id lsg1
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 8361837 ~ 8377825 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGTCCCGGTGACGCTCCTCTCACAGCCAGCATGTGCAGCAGTAGCAGCTGGAGCTAAagataaagctaaagctaaaacccGAACCAGCAGCAGCTCTAAACCCGAAGCCCGAACCCCGAACCCCGGACCCGGTATGGGTAAGAAGAAGAGCACGGGCCTGGGCAGGGCCCTGATTAAAGAGAGACTCGGAGCGGCGCGGGGGAACCGGAGGAACGATACCTGGCTACACACCAGTGAACTGAATGATGGATATGACTGGGGTCGTCTGAATCTTCAGTCTGTGACCGAGCAGAGCTCACTGGATGATTTCCTGGCCACGGCTGAACTCGCTGGAACTGAATTTATTGCAGAGAAGCTGAACGTGAGGTTTGTACCGCCTGAAGCCCGGACTGGATTACTAACAGCCGAAGAGTCCAAAAGACTGAAGAAGCTCCATGAAGACAACAGACAGTTCCTTCGGATCCCACGAAGACCTCCGTGGGATGAAAGTACGAGCCCCGAGGTTCTCCAGCAGACTGAAAGAGACACTTTCCTCACATGGAGACGAGATTTGGCGAGGCTGGAGGAGGAACAGAAGTTGATTCTTACACCTTTTGAGAGGAACTTGGATTTTTGGAGGCAGCTCTGGAGAGTCATTGAGAGAAGTGATGTCGTGGTTCAGATTCTTGATGCCAGAAACCCTCTTCTGTTTCGCTGTCCAGATCTAGAGAAATATGTAAAAGAGGTGTCCGGTCAGAAGGTTAACatgctgcttttaaataaagctGATCTCCTCACTCGAGAACAGCGACGGACCTGGGCCAGGTACTTCCAGAAAGAAGGTATCAGAGCCGTGTTCTGGTCCGCTCTGGCTGAGGCAGCCCGACTGGAGGCTGAAGAAAAGGGAGAAGATGTGGTTGAGGATGAGGAGATGAGTGATCCAGAAGCTTCAGTCAGCTACAGTGAAACTGAAGGATCAGCGACGAATAGTAACGAAAAGgaaatgaaaaacaataatgagaaggaagaggaggaggaggatgatgatgaagaagagaGTATAGAGGAGATTTTTGAGGACTGTACCTCAGAAGCAGACTGGCAGACCTGCTCAGAGGCGTCAGGAGACGAAGGAGAGGAAGGAGCACGCAAATCATCTTCGTTTTATAACTCCAGCCGTCTGCTGCACAAAGACGAGCTGCTGGAAATGTTTAAATCTGCACATTCTGGACCCACATGCAAGGAGGGACAGCTGACCGTCGGACTGGTTGGTTATCCTAATGTTGGCAAAAGCTCCACTATCAACACCATCTTCCAGAATAAGAAGGTGTCAGTATCGGCTACACCTGGACACACTAAGCACTTTCAGACTCTGTTTGTGGAGCCCAGCCTCTGCCTGTGTGACTGTCCTGGTCTGGTCATGCCTTCCTTCGTGTCGACCAAAGCTGAAATGATCTGCTGTGGGATTCTCCCCATCGACCAGATGCGAGACCACGTCCCAGCTATTTCCCTCGTTTGTCAGACGATCCCAAGAACCGTGCTTGAGGGAACGTACGGCTTCAACATCATCAGACCAAGAGAGGACGAAGACCCTGATCGCCCACCCACCGCTGAGGAGCTGCTCGCTGCGTATGGATGTATGAGGGGCTTCATGACAGCACATGGTCAGCCGGACCAGTCCAGATCAGCCCGATACGTTCTGAAAGATTATGTTAGTGGAAAGCTGCTCTACTGTCACCCTCCTCCCCACATTAACCCTGAAGACTTCCAGCCTCAGCACGCCAAGTTTTCCTGCCCCTCTGCTCAGAGTGATCCCTCTAACTGCACCATCGGGTCTTCAAAAGTCAAACGGATCGAGAATTCTGTAGATAAACACTTCTTTCATCAGGAAAATGTTCGGGCTCTAACCAAGGGTGTGCAGATGGTGATGGGCTACAGGCCGGGCTGCGGTCCTGTGAAACAAGGACAAGCTGGATCAGAACAGCCTGTTGGAAAGCCGTGGAAAAAACACGGCAACAGGAATAAGAAGGAGAAAGTGAGAAGACTCAATAAGCACCTGGACTCCTGAATGCTGCCGTGTCCAGCGTAAATGTGGGACATTAATTAAAGAGACACTGGGTGGTTAATGTGTTCATGGAAAATCTTTTGCTTTCCAAATGCAACATTTTTCAGAAAGTCTGATTATTGCTGCTGATCATTCCATCGTTAAAACAGCAATTTCCAGTTATTTCAATTACattgtaatttaatgtattaaaacatttatacagtCTGAATGCAGACACGTTGCAGAAACACCAATCAAACCATTAAACTATATTAATAAGAAATTACCTACTGTTGGGAGGGGAAAAAAGGCAGAAAATAATGCTTTGCAAGAGGTCCAaagaaatatcaaaaaaaaaaaaaaaagacaggtaCTCCTTGAGCATGGGTGAATCAGTCTCAACGTTGCTGTGCAGTTCatatagataaaaatataaataggcaggtaaaactttacaataagaAActTGCAGTACTTATGCTagaatatgtattatatacaacATTCTTACGGATTTAATCATTAAGTAGTGTCTTAACAGGTgtcaaataaatagttaagagattacttaaccatttaacaaa

Function

GO:

id name namespace
GO:0051168 nuclear export biological_process
GO:0015031 protein transport biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005829 cytosol cellular_component
GO:0015030 Cajal body cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K14539 LSG1; large subunit GTPase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55122 lncRNA upstream 192300 8167779 ~ 8169537 (+) True G40952
TU55120 lncRNA upstream 196176 8165391 ~ 8165661 (+) True G40950
TU55119 lncRNA upstream 196566 8164952 ~ 8165271 (+) True G40949
TU55117 lncRNA upstream 197770 8163711 ~ 8164067 (+) True G40947
TU55082 lncRNA upstream 393414 7968116 ~ 7968423 (+) True G40916
XR_002649927.1 lncRNA downstream 31637 8409462 ~ 8454415 (+) True LOC111192502
TU55147 lncRNA downstream 31825 8409650 ~ 8454348 (+) False LOC111192502
TU55167 lncRNA downstream 121938 8499763 ~ 8500064 (+) True G40987
TU55165 lncRNA downstream 123089 8500914 ~ 8502742 (+) True G40985
TU55166 lncRNA downstream 125045 8502870 ~ 8504310 (+) True G40986
XM_007252576.3 mRNA upstream 198879 8102275 ~ 8162958 (+) True xxylt1
XM_007252577.2 mRNA upstream 1348050 6877772 ~ 7013787 (+) True pcdh17
XM_015606694.2 mRNA upstream 1348050 6877772 ~ 7013787 (+) False pcdh17
XM_022669530.1 mRNA upstream 2525750 5814515 ~ 5836087 (+) True lims1
XM_022669529.1 mRNA upstream 2526751 5814514 ~ 5835086 (+) False lims1
XM_022670142.1 mRNA downstream 4431 8382256 ~ 8400857 (+) True tmem44
XM_022670147.1 mRNA downstream 81690 8459515 ~ 8498939 (+) True atp13a3
XM_022669537.1 mRNA downstream 134279 8512104 ~ 8523308 (+) True LOC103028988
XM_022669538.1 mRNA downstream 174145 8551970 ~ 8636478 (+) True col6a1
XM_022669540.1 mRNA downstream 283174 8660999 ~ 8693477 (+) False col6a2
XR_001518717.2 other upstream 534923 7826523 ~ 7826914 (+) True LOC107197696
TU54910 other upstream 1828163 6533365 ~ 6533674 (+) True G40756
TU54660 other upstream 3051030 5308546 ~ 5310807 (+) False snrpa1
TU54378 other upstream 4226252 4134510 ~ 4135585 (+) True G40318
TU53995 other upstream 5623620 2735596 ~ 2738217 (+) False LOC103029230
TU55733 other downstream 1617928 9995753 ~ 10005398 (+) False LOC103037553
trnar-ucg_1 other downstream 1914512 10292337 ~ 10292409 (+) True trnar-ucg_1
trnam-cau_21 other downstream 2377384 10755209 ~ 10755281 (+) True trnam-cau_21
TU56242 other downstream 3193401 11571226 ~ 11580329 (+) True G41828
TU56269 other downstream 3376518 11754343 ~ 11757209 (+) False tmem221

Expression Profile