RNA id: XM_022669548.1


Basic Information

Item Value
RNA id XM_022669548.1
length 2965
RNA type mRNA
GC content 0.49
exon number 14
gene id LOC103026226
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 8828088 ~ 8919744 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCGCGCGCCAGGTGGGTCGCGGTTCCGAGTCTATCCGAGACCTGAAGCAGTAAGTTACACTGAGCCGCTCGCTCTGAGAACAGGAACATGCTGCGGTCCCGGTTCGGCTGGCGGTTGGGCTCGCGGTTGGTCTGCGCGCTGCTGTGGTGTGTGCTGGATCTGTCCGCGTGCCGGAGGTTCGGGTCTGAGGACGGGGAGACAGTGGGGAGGATTAACAGCGCGAGGTGCTTCTCCCGCTGCCTGACCCTCCATATAACCCAGCTTACCTCCACCTTCCAGCACCTGCAGAGTGATGAGGTTCTGGGTTGGTGTGAAAATCACAGGAGGTGTTCTCAGTGCCTTCAACCATGCAAGGAATTATGGGAAACAAGAAAAGCCCTGTCTCACAAGCTCTGCGAGAAGCATCACGAGTGTGTGACGAGTGCAGAGTTCCTGCTGTCGCTGCAGAGTCAGAAGCAGGGGGACTGTCCTGCTCCTCAGAGGGCTACAGGATTCGCGGCGGCGTGTGTGGAGAGCTGCAGCTCAGACCGGGAATGTTCTGCCTCCAAAAAATGCTGCTCTAACGGCTGTGGCCATACCTGCCAACCCCCAGCCAACCTGTTCAAAGGTGTCCCTCTGAAGCCAAGGAAAGACATGACCTTTATAGAGGACCAGTACGGGCAGCTGGAAGTGGCATGGATGTCCAAATTCAATGTGTCCATTGAGCCAGTTCTGTATATTCTGCAGCGGAGGTGGAACGACGGGATTCATCCCAGTGAAGACGATGCTTCCACCTGGTACACTGTTCTGATGACCATGGAGGAACGGGCCGTGCTGAAGGACATCCGGCCTCAGCGGTGGTACCAGTTTCGAGTCAGCGCGGTCAACAGCCAGGGCACACGAGGCTTCACCACTCCCAGCAAGCACTTCTTCTCTACAAGAGaTCCGTTACCCCCCGAGACCCCGCAGAAGGCCCGGGTGGAGAATGAGACCGTGCACGCTGATGGCAGTGTGAGCGTGCTGCTCCGCTGGGACCCCCCTGCTGAGGGTGACCTGGTAGTTGACCGTTACAAGGTGACCTGGAGCGCCCGCGGCGGGCTAGCCGGCGGCCCGAACGGGAAGGAGAGCGGCCGGGTCACAGACGGGACTCTGACCGAGATGCAGCTGGGTGGACTCCAGCCGGACACACGCTACACAGTGCAGATCCAGGCCGTCTCTTTCTCTGGGCAGAAGCGATTAAAGAGTGGCCGGGCTCAGCTCTCCTTCAccaccgctgctgctgctgctgcttccacTGgttcctctcctccctctcgaGAATTCTCCAACGAGCTGCCCATCTCCCGCTCCTCTCCCAGCGTCCTGCGCCTGGAGGCCGCCGCCCCCCACTACCACGACAATCAGCTGCAGGTCAAGGTGTTCTGGAAGAGTCGAGTCTCAGAAAGTCAGAAAGCATCTTCTTCGTATTTGTTAAGTTGGTATCCAGAAGTTTGTGGCGGTAACGTGaccaaaagagagaaaatggcTACTGTACAGGGCACACATTTCATCATCACAGGCCTCCTTTTTGCCTGTAAGTACAAGGTGGCGGTGATGCCCCTTTCAGAGCATGGGCATCGGGCAGGAGCCGTGACCTCCGTCACCACCCCGCATTGCTCAACACTGAAAGGCCGGGGAAAGAAACTCGTATCCTGTGCCCGGGAGGAGCGCCACCTGCAGGTGAAGAAAGCCCTGCAGCGCCCGGAGAAGCTGAGCGCAGTGTTTCAGACAGTGAACGGCTCGGTGGAGGGTCTGTTCAGCTGGCAGGTGTCTGAAGCTTCCCCAGGTCAGACTCCCATCACAGGGTTCCAGTTCTCCTGGATTAAAGTCTCCAGCATTAGCAGTGCTGTGGATCAATCTCCAGACACACTCATCTCTCAGTCGCTGAATCTAGCTCCTgGTCAGCTCTCTCTCAGGGTGGAGCGGCTGCAGCCAGAGAGCGTTTATAAGGTGCAGGTTCAGGTTCTGTCTGAAACAGGAAGTGGGCCTTCAGTAGCCAGGATGCTGCACACTCCACAGCTTAATGCCACACTGCTATGAGACTCCTGTACAGAtttgcatcatcatcatcattgtaAAGCTTCTCCCTGTGGTGCATCTCTCTCCGGTCCTCTCCAGTATAAGCAGCTCCTGCACTGGTGCTTTAGTGCCACGGTTTTGTTGCATGAAGAGAACATCAAAGGTTTAAATATGTGAACCAACAACCTTGTTCATGAACTGTTCAGAgaagtttaaaatgtataatttaatccTGATTTATCATGTAAAAATGTGTAGCACTGATGTGTGTAGTATGTAGTGATACAGTAGCTCTgtgctgtttatttttgttatccTGTTAGAACATATATtgcttttacatatatttaatatgaacGCCTGTCCTTGTCTACGAATAatgttataaattattatattatattacagctTAACATTTTTTACAGGTCATGTTCAGTCTACTTtattataacatatttattttaatgcacaAAAGTGTGAGGTATCCATGATTACAatttcactgttaaaatatttagaGGATAATTAGCTAATTATACTCTATACTATCATTGTTGTAGAAAATAAGTACATTTTtgcaaataagtaaataagcaCTGGCTGATGTTATAAACAACATATTGCCAGGGCTGCATATATGACATCATGTTTAAATTGAATACATACACAAGTATTtataacaagtaaaaaaaaaatgtggtgctgtgtttgaaaaaaaaaaaaacattaaaaattaaaatataggaTGATTTATCAATGTTTAAAGTGCCAGACATATAAAACCATTGTACGTATTatgttacacatttttattacactGTGGCAGTTTTACTTTTGTACAAAAATGttgtatgtaaaatgtaaatattgcaTTTGATGTTGTGTTTAGTGTCataatgttacaaataaatgttaacGTATAAGTTCA

Function

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0030414 peptidase inhibitor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55319 lncRNA upstream 22885 8804984 ~ 8805203 (+) True G41087
XR_002649928.1 lncRNA upstream 56827 8770054 ~ 8771261 (+) True LOC111192503
TU55236 lncRNA upstream 62208 8763149 ~ 8765880 (+) True G41040
TU55239 lncRNA upstream 85345 8718685 ~ 8742743 (+) False LOC103027717
TU55172 lncRNA upstream 303775 8523281 ~ 8524313 (+) False LOC103028988
TU55330 lncRNA downstream 8718 8928462 ~ 8935486 (+) False LOC103022991
TU55337 lncRNA downstream 17674 8937418 ~ 8942071 (+) True G41099
TU55334 lncRNA downstream 35059 8954803 ~ 8988103 (+) True G41097
TU55382 lncRNA downstream 211365 9131109 ~ 9163752 (+) True G41127
TU55386 lncRNA downstream 245265 9165009 ~ 9168734 (+) True G41131
XM_022670148.1 mRNA upstream 65296 8718560 ~ 8762792 (+) True LOC103027717
XM_022669541.1 mRNA upstream 111346 8702442 ~ 8716742 (+) True LOC103028050
XM_022669542.1 mRNA upstream 111346 8702617 ~ 8716742 (+) False LOC103028050
XM_022669539.1 mRNA upstream 127017 8661001 ~ 8701071 (+) True col6a2
XM_022669540.1 mRNA upstream 134611 8660999 ~ 8693477 (+) False col6a2
XM_007252572.3 mRNA downstream 2184 8921928 ~ 8935403 (+) True LOC103022991
XM_022669549.1 mRNA downstream 23098 8942842 ~ 8986586 (+) True LOC103025921
XM_022669551.1 mRNA downstream 23098 8942842 ~ 8986586 (+) False LOC103025921
XM_022669550.1 mRNA downstream 23098 8942842 ~ 8986586 (+) False LOC103025921
XM_022669552.1 mRNA downstream 23098 8942842 ~ 8986586 (+) False LOC103025921
XR_001518717.2 other upstream 1001174 7826523 ~ 7826914 (+) True LOC107197696
TU54910 other upstream 2294414 6533365 ~ 6533674 (+) True G40756
TU54660 other upstream 3517281 5308546 ~ 5310807 (+) False snrpa1
TU54378 other upstream 4692503 4134510 ~ 4135585 (+) True G40318
TU53995 other upstream 6089871 2735596 ~ 2738217 (+) False LOC103029230
TU55733 other downstream 1076009 9995753 ~ 10005398 (+) False LOC103037553
trnar-ucg_1 other downstream 1372593 10292337 ~ 10292409 (+) True trnar-ucg_1
trnam-cau_21 other downstream 1835465 10755209 ~ 10755281 (+) True trnam-cau_21
TU56242 other downstream 2651482 11571226 ~ 11580329 (+) True G41828
TU56269 other downstream 2834599 11754343 ~ 11757209 (+) False tmem221

Expression Profile